Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013713A_C01 KMC013713A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00024118.1| hypothetical protein [Ralstonia metallidurans] 31 6.1
gb|AAK38482.1| beta-D-xylosidase [Hordeum vulgare] 31 8.0
>gb|ZP_00024118.1| hypothetical protein [Ralstonia metallidurans]
Length = 531
Score = 31.2 bits (69), Expect = 6.1
Identities = 13/40 (32%), Positives = 22/40 (54%)
Frame = +2
Query: 299 WDSDKS*EKWLRSVMMVFHRGSQSCIQTYTKGVHQTMISM 418
W ++ KW+RSV H SC++ + GVH T +++
Sbjct: 80 WWCRRAVTKWMRSVSRWKHFSRASCLRWHESGVHMTTLNI 119
>gb|AAK38482.1| beta-D-xylosidase [Hordeum vulgare]
Length = 777
Score = 30.8 bits (68), Expect = 8.0
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 471 KVIEEGSHFLLVGDEEYPIDII 406
KVI++GSHF+ VGD+E+ + +
Sbjct: 755 KVIDQGSHFVRVGDDEFELSFM 776
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,808,246
Number of Sequences: 1393205
Number of extensions: 8092023
Number of successful extensions: 13386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13383
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
