Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013712A_C01 KMC013712A_c01
(968 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM26299.1| cellulose synthase [Populus tremuloides] 578 e-164
gb|AAD32031.1|AF088917_1 cellulose synthase catalytic subunit [A... 521 e-147
ref|NP_197244.1| cellulose synthase catalytic subunit (IRX3); pr... 521 e-147
gb|AAO41140.1| cellulose synthase [Oryza sativa (japonica cultiv... 363 2e-99
gb|AAF89967.1|AF200531_1 cellulose synthase-7 [Zea mays] 350 1e-95
>gb|AAM26299.1| cellulose synthase [Populus tremuloides]
Length = 1032
Score = 578 bits (1491), Expect = e-164
Identities = 267/318 (83%), Positives = 299/318 (93%)
Frame = +2
Query: 14 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECG 193
MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGD +GLTVDGDLFVACNECG
Sbjct: 1 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDEIGLTVDGDLFVACNECG 60
Query: 194 FPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKNKQ 373
FPVCRPCYEYERREG+QNCPQCKTRYKRLKGSPRVEGDD+E+DVDDIEHEF I+D+++K
Sbjct: 61 FPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGDDEEDDVDDIEHEFIIEDEQDKN 120
Query: 374 VNVVEALLHGKMSYGRGLEDDENSQFPPVISGGRSRPVSGEFPVGSHYGEQMLSSSLHKR 553
++ EA+LHGKM+YGRG +D+ENSQFPPVI+G RSRPVSGEF +GSH GEQMLSSSLHKR
Sbjct: 121 KHLTEAMLHGKMTYGRGHDDEENSQFPPVITGIRSRPVSGEFSIGSH-GEQMLSSSLHKR 179
Query: 554 IHPYPMSESGSVAWDEKKEEGWKDRMDDWKLQQGNLGPEADEDTDASMLDEARQPLSRKV 733
+HPYP+SE GS WDEKKE GWK+RMD+WK+Q GNLGPE D+D +A+ML++ARQPLSRKV
Sbjct: 180 VHPYPVSEPGSARWDEKKEGGWKERMDEWKMQHGNLGPEQDDDAEAAMLEDARQPLSRKV 239
Query: 734 PIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFALTWILDQFP 913
PIASSKINPYRMVIVARL+ILA FLRYRIL+PVHDALGLWLTSI+CEIWFA++WILDQFP
Sbjct: 240 PIASSKINPYRMVIVARLIILAVFLRYRILHPVHDALGLWLTSIVCEIWFAISWILDQFP 299
Query: 914 KWFPIDRET*LDRLSIRY 967
KW PIDRET LDRLS+RY
Sbjct: 300 KWLPIDRETYLDRLSLRY 317
>gb|AAD32031.1|AF088917_1 cellulose synthase catalytic subunit [Arabidopsis thaliana]
Length = 1026
Score = 521 bits (1341), Expect = e-147
Identities = 246/318 (77%), Positives = 276/318 (86%)
Frame = +2
Query: 14 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECG 193
MEASAGLVAGSHNRNELVVIH HEE KPLKNLDGQ CEICGD +GLTV+GDLFVACNECG
Sbjct: 1 MEASAGLVAGSHNRNELVVIHNHEEPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECG 60
Query: 194 FPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKNKQ 373
FP CRPCYEYERREG+QNCPQCKTRYKRL+GSPRVEGD+DEED+DDIE+EFNI+ +++K
Sbjct: 61 FPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDIDDIEYEFNIEHEQDKH 120
Query: 374 VNVVEALLHGKMSYGRGLEDDENSQFPPVISGGRSRPVSGEFPVGSHYGEQMLSSSLHKR 553
+ EA+L+GKMSYGRG EDDEN +FPPVI+GG SGEFPVG YG LHKR
Sbjct: 121 KHSAEAMLYGKMSYGRGPEDDENGRFPPVIAGGH----SGEFPVGGGYGNG--EHGLHKR 174
Query: 554 IHPYPMSESGSVAWDEKKEEGWKDRMDDWKLQQGNLGPEADEDTDASMLDEARQPLSRKV 733
+HPYP SE+GS E GW++RMDDWKLQ GNLGPE D+D + ++DEARQPLSRKV
Sbjct: 175 VHPYPSSEAGS-------EGGWRERMDDWKLQHGNLGPEPDDDPEMGLIDEARQPLSRKV 227
Query: 734 PIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFALTWILDQFP 913
PIASSKINPYRMVIVARLVILA FLRYR+LNPVHDALGLWLTS+ICEIWFA++WILDQFP
Sbjct: 228 PIASSKINPYRMVIVARLVILAVFLRYRLLNPVHDALGLWLTSVICEIWFAVSWILDQFP 287
Query: 914 KWFPIDRET*LDRLSIRY 967
KWFPI+RET LDRLS+RY
Sbjct: 288 KWFPIERETYLDRLSLRY 305
>ref|NP_197244.1| cellulose synthase catalytic subunit (IRX3); protein id:
At5g17420.1, supported by cDNA: gi_4886755 [Arabidopsis
thaliana] gi|11357223|pir||T51579 cellulose synthase
catalytic subunit (IRX3) - Arabidopsis thaliana
gi|5230423|gb|AAD40885.1|AF091713_1 cellulose synthase
catalytic subunit [Arabidopsis thaliana]
gi|9755765|emb|CAC01737.1| cellulose synthase catalytic
subunit (IRX3) [Arabidopsis thaliana]
gi|22654965|gb|AAM98075.1| AT5g17420/T10B6_80
[Arabidopsis thaliana] gi|28416517|gb|AAO42789.1|
AT5g17420/T10B6_80 [Arabidopsis thaliana]
Length = 1026
Score = 521 bits (1341), Expect = e-147
Identities = 246/318 (77%), Positives = 276/318 (86%)
Frame = +2
Query: 14 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECG 193
MEASAGLVAGSHNRNELVVIH HEE KPLKNLDGQ CEICGD +GLTV+GDLFVACNECG
Sbjct: 1 MEASAGLVAGSHNRNELVVIHNHEEPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECG 60
Query: 194 FPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKNKQ 373
FP CRPCYEYERREG+QNCPQCKTRYKRL+GSPRVEGD+DEED+DDIE+EFNI+ +++K
Sbjct: 61 FPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDIDDIEYEFNIEHEQDKH 120
Query: 374 VNVVEALLHGKMSYGRGLEDDENSQFPPVISGGRSRPVSGEFPVGSHYGEQMLSSSLHKR 553
+ EA+L+GKMSYGRG EDDEN +FPPVI+GG SGEFPVG YG LHKR
Sbjct: 121 KHSAEAMLYGKMSYGRGPEDDENGRFPPVIAGGH----SGEFPVGGGYGNG--EHGLHKR 174
Query: 554 IHPYPMSESGSVAWDEKKEEGWKDRMDDWKLQQGNLGPEADEDTDASMLDEARQPLSRKV 733
+HPYP SE+GS E GW++RMDDWKLQ GNLGPE D+D + ++DEARQPLSRKV
Sbjct: 175 VHPYPSSEAGS-------EGGWRERMDDWKLQHGNLGPEPDDDPEMGLIDEARQPLSRKV 227
Query: 734 PIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIICEIWFALTWILDQFP 913
PIASSKINPYRMVIVARLVILA FLRYR+LNPVHDALGLWLTS+ICEIWFA++WILDQFP
Sbjct: 228 PIASSKINPYRMVIVARLVILAVFLRYRLLNPVHDALGLWLTSVICEIWFAVSWILDQFP 287
Query: 914 KWFPIDRET*LDRLSIRY 967
KWFPI+RET LDRLS+RY
Sbjct: 288 KWFPIERETYLDRLSLRY 305
>gb|AAO41140.1| cellulose synthase [Oryza sativa (japonica cultivar-group)]
Length = 1092
Score = 363 bits (933), Expect = 2e-99
Identities = 190/349 (54%), Positives = 236/349 (67%), Gaps = 31/349 (8%)
Frame = +2
Query: 14 MEASAGLVAGSHNRNELVVIH--GHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNE 187
MEASAGLVAGSHNRNELVVI G KP+K+ +GQVC+ICGD VGLT DG+ FVACNE
Sbjct: 1 MEASAGLVAGSHNRNELVVIRRDGEPGPKPVKHTNGQVCQICGDDVGLTPDGEPFVACNE 60
Query: 188 CGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKN 367
C FPVCR CYEYERREG+QNCPQCKTR+KRLKG RV GD++EEDVDD+E+EFN D+ +
Sbjct: 61 CAFPVCRDCYEYERREGTQNCPQCKTRFKRLKGCARVPGDEEEEDVDDLENEFNWRDKTD 120
Query: 368 KQVNVVEALLHGKMSYGRGLEDDENSQF------PPVISGGRSRPVSGEFPVGSHYGEQM 529
Q V E++LHG MSYGRG + D Q P+++ G ++ + P H
Sbjct: 121 SQY-VAESMLHGHMSYGRGGDLDGVPQHFQPIPNVPLLTNGE---MADDIPPEQHALVPS 176
Query: 530 LSSSLHKRIHPYP------------MSESGSVAWDEKKEEGWKDRMDDWKLQQGNL---- 661
KRIHP P M S +A WK+RM+ WK +Q L
Sbjct: 177 FMGGGGKRIHPLPYADPNLPVQPRSMDPSKDLAAYGYGSVAWKERMESWKQKQERLHQMR 236
Query: 662 ----GPEAD---EDTDASMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRI 820
G + D +D D ++DEARQPLSRK+PI+SS +NPYRM+I+ RLV+L FF YR+
Sbjct: 237 NDGGGKDWDGDGDDADLPLMDEARQPLSRKIPISSSLVNPYRMIIIIRLVVLGFFFHYRV 296
Query: 821 LNPVHDALGLWLTSIICEIWFALTWILDQFPKWFPIDRET*LDRLSIRY 967
++PV DA LWL S+ICEIWFA++WILDQFPKWFPI+RET LDRL++R+
Sbjct: 297 MHPVPDAFALWLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRF 345
>gb|AAF89967.1|AF200531_1 cellulose synthase-7 [Zea mays]
Length = 1086
Score = 350 bits (899), Expect = 1e-95
Identities = 181/346 (52%), Positives = 230/346 (66%), Gaps = 28/346 (8%)
Frame = +2
Query: 14 MEASAGLVAGSHNRNELVVIH--GHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNE 187
MEASAGLVAGSHNRNELVVI G KP + +GQVC+ICGD VGL GD FVACNE
Sbjct: 1 MEASAGLVAGSHNRNELVVIRRDGDPGPKPPREQNGQVCQICGDDVGLAPGGDPFVACNE 60
Query: 188 CGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKN 367
C FPVCR CYEYERREG+QNCPQCKTRYKRLKG RV GD++E+ VDD+++EFN D +
Sbjct: 61 CAFPVCRDCYEYERREGTQNCPQCKTRYKRLKGCQRVTGDEEEDGVDDLDNEFNWDGHDS 120
Query: 368 KQVNVVEALLHGKMSYGRGLEDDENSQF------PPVISGGRSRPVSGEFPVGSHYGEQM 529
+ +V E++L+G MSYGRG + + Q P+++ G+ + + P H
Sbjct: 121 Q--SVAESMLYGHMSYGRGGDPNGAPQAFQLNPNVPLLTNGQ---MVDDIPPEQHALVPS 175
Query: 530 LSSSLHKRIHPYPMSES--------------------GSVAWDEKKEEGWKDRMDDWKLQ 649
KRIHP P ++ GSVAW E+ E WK R +
Sbjct: 176 FMGGGGKRIHPLPYADPSLPVQPRSMDPSKDLAAYGYGSVAWKERMEN-WKQRQERMHQT 234
Query: 650 QGNLGPEADEDTDASMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNP 829
+ G + +D D ++DEARQ LSRK+P+ SS+INPYRM+I+ RLV+L FF YR+++P
Sbjct: 235 GNDGGGDDGDDADLPLMDEARQQLSRKIPLPSSQINPYRMIIIIRLVVLGFFFHYRVMHP 294
Query: 830 VHDALGLWLTSIICEIWFALTWILDQFPKWFPIDRET*LDRLSIRY 967
V+DA LWL S+ICEIWFA++WILDQFPKWFPI+RET LDRLS+R+
Sbjct: 295 VNDAFALWLISVICEIWFAMSWILDQFPKWFPIERETYLDRLSLRF 340
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 934,204,036
Number of Sequences: 1393205
Number of extensions: 23264866
Number of successful extensions: 104091
Number of sequences better than 10.0: 255
Number of HSP's better than 10.0 without gapping: 81817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97306
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55187681368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
