Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013706A_C01 KMC013706A_c01
(826 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_206440.1| hypothetical protein XP_206440 [Mus musculus] 34 2.3
ref|NP_600057.1| phosphoserine aminotransferase [Corynebacterium... 33 6.7
gb|EAA19830.1| hypothetical protein [Plasmodium yoelii yoelii] 33 6.7
>ref|XP_206440.1| hypothetical protein XP_206440 [Mus musculus]
Length = 457
Score = 34.3 bits (77), Expect = 2.3
Identities = 19/58 (32%), Positives = 31/58 (52%)
Frame = -1
Query: 631 KSCRLMDSHCLC*KRIVQVLEDMKLLFLVAANDFTENPIKVK*VNSMALFSTWGVCFL 458
K R +D+ LC KR+ Q L D++++ V ND + P + V+ + T +CFL
Sbjct: 321 KLIRTLDNGILCVKRLAQHLADLRVILEVELNDISTVPGPLHVVSKITAMITDILCFL 378
>ref|NP_600057.1| phosphoserine aminotransferase [Corynebacterium glutamicum ATCC
13032] gi|21323594|dbj|BAB98221.1| Phosphoserine
aminotransferase [Corynebacterium glutamicum ATCC 13032]
Length = 376
Score = 32.7 bits (73), Expect = 6.7
Identities = 19/55 (34%), Positives = 27/55 (48%)
Frame = -3
Query: 347 IPNYDIFFSFEILFCFQSDSGMILWTTSPPFPSMFYRINQPGEFSPCLINVQLAL 183
I N D+++ F CF SD G+ L SP +IN F P +N+Q A+
Sbjct: 184 IKNSDVYY-FSPQKCFASDGGLWLAAMSPAALERIEKINASDRFIPEFLNLQTAV 237
>gb|EAA19830.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 637
Score = 32.7 bits (73), Expect = 6.7
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 64 VPFFLLHRYKPTIMSFFIRTD---NLSKFF*HEIF*NLTMP 177
+ FF +RYK T+MSFF+RT+ N + ++ +T+P
Sbjct: 592 ISFFFFNRYKETLMSFFLRTNIYINFHNSSKNNVYFRITIP 632
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 687,538,632
Number of Sequences: 1393205
Number of extensions: 14350624
Number of successful extensions: 28537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28530
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
