Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013689A_C01 KMC013689A_c01
(857 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM53321.1| unknown protein [Arabidopsis thaliana] 177 2e-43
ref|NP_192049.1| hypothetical protein; protein id: At4g01400.1 [... 177 2e-43
pir||T01705 hypothetical protein A_IG002N01.1 - Arabidopsis thal... 177 2e-43
ref|NP_056201.1| component of oligomeric golgi complex 4; conser... 128 1e-28
pir||T08750 hypothetical protein DKFZp586E1519.1 - human (fragme... 128 1e-28
>gb|AAM53321.1| unknown protein [Arabidopsis thaliana]
Length = 738
Score = 177 bits (449), Expect = 2e-43
Identities = 89/95 (93%), Positives = 92/95 (96%)
Frame = -1
Query: 857 EVIMMQTRFSQLGGLQLDRDARALVSHFSIMTQRTVRDKFARLTQMATILNLEKVSEILD 678
EVIMMQ RFSQLGGLQLDRD RALVSHFS MTQRTVRDKFARLTQMATILNLEKVSEILD
Sbjct: 641 EVIMMQKRFSQLGGLQLDRDTRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILD 700
Query: 677 FWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAISA 573
FWGENSGPMTWRLTPAEVRRVLGLRV+FKPE+I+A
Sbjct: 701 FWGENSGPMTWRLTPAEVRRVLGLRVEFKPESIAA 735
>ref|NP_192049.1| hypothetical protein; protein id: At4g01400.1 [Arabidopsis thaliana]
gi|25407104|pir||C85018 hypothetical protein AT4g01400
[imported] - Arabidopsis thaliana
gi|7267637|emb|CAB80949.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1117
Score = 177 bits (449), Expect = 2e-43
Identities = 89/95 (93%), Positives = 92/95 (96%)
Frame = -1
Query: 857 EVIMMQTRFSQLGGLQLDRDARALVSHFSIMTQRTVRDKFARLTQMATILNLEKVSEILD 678
EVIMMQ RFSQLGGLQLDRD RALVSHFS MTQRTVRDKFARLTQMATILNLEKVSEILD
Sbjct: 1020 EVIMMQKRFSQLGGLQLDRDTRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILD 1079
Query: 677 FWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAISA 573
FWGENSGPMTWRLTPAEVRRVLGLRV+FKPE+I+A
Sbjct: 1080 FWGENSGPMTWRLTPAEVRRVLGLRVEFKPESIAA 1114
>pir||T01705 hypothetical protein A_IG002N01.1 - Arabidopsis thaliana
gi|2191127|gb|AAB61014.1| A_IG002N01.1 gene product
[Arabidopsis thaliana]
Length = 177
Score = 177 bits (449), Expect = 2e-43
Identities = 89/95 (93%), Positives = 92/95 (96%)
Frame = -1
Query: 857 EVIMMQTRFSQLGGLQLDRDARALVSHFSIMTQRTVRDKFARLTQMATILNLEKVSEILD 678
EVIMMQ RFSQLGGLQLDRD RALVSHFS MTQRTVRDKFARLTQMATILNLEKVSEILD
Sbjct: 80 EVIMMQKRFSQLGGLQLDRDTRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILD 139
Query: 677 FWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAISA 573
FWGENSGPMTWRLTPAEVRRVLGLRV+FKPE+I+A
Sbjct: 140 FWGENSGPMTWRLTPAEVRRVLGLRVEFKPESIAA 174
>ref|NP_056201.1| component of oligomeric golgi complex 4; conserved oligomeric Golgi
complex protein 4; complexed with Dor1p [Homo sapiens]
gi|22653699|sp|Q9H9E3|COG4_HUMAN Conserved oligomeric
Golgi complex component 4 gi|10434521|dbj|BAB14286.1|
unnamed protein product [Homo sapiens]
Length = 785
Score = 128 bits (322), Expect = 1e-28
Identities = 57/93 (61%), Positives = 81/93 (86%)
Frame = -1
Query: 857 EVIMMQTRFSQLGGLQLDRDARALVSHFSIMTQRTVRDKFARLTQMATILNLEKVSEILD 678
E +++++ F++LGGLQ D++ R+L+++ + +T T+RDKFARL+QMATILNLE+V+EILD
Sbjct: 688 EKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILD 747
Query: 677 FWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAI 579
+WG NSGP+TWRLTPAEVR+VL LR+DF+ E I
Sbjct: 748 YWGPNSGPLTWRLTPAEVRQVLALRIDFRSEDI 780
>pir||T08750 hypothetical protein DKFZp586E1519.1 - human (fragment)
gi|4884130|emb|CAB43272.1| hypothetical protein [Homo
sapiens]
Length = 560
Score = 128 bits (322), Expect = 1e-28
Identities = 57/93 (61%), Positives = 81/93 (86%)
Frame = -1
Query: 857 EVIMMQTRFSQLGGLQLDRDARALVSHFSIMTQRTVRDKFARLTQMATILNLEKVSEILD 678
E +++++ F++LGGLQ D++ R+L+++ + +T T+RDKFARL+QMATILNLE+V+EILD
Sbjct: 463 EKVVLKSTFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILD 522
Query: 677 FWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAI 579
+WG NSGP+TWRLTPAEVR+VL LR+DF+ E I
Sbjct: 523 YWGPNSGPLTWRLTPAEVRQVLALRIDFRSEDI 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,624,643
Number of Sequences: 1393205
Number of extensions: 14367953
Number of successful extensions: 40221
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40178
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45431072631
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
