Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013688A_C01 KMC013688A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain (Beta-2 tubulin) gi|13... 214 7e-61
sp|P37392|TBB1_LUPAL TUBULIN BETA-1 CHAIN gi|486734|pir||S35142 ... 211 6e-60
gb|AAK96884.1| beta tubulin [Arabidopsis thaliana] gi|20148289|g... 204 7e-58
ref|NP_568437.1| Expressed protein; protein id: At5g23860.1, sup... 204 7e-58
pir||JQ1592 tubulin beta-8 chain - Arabidopsis thaliana gi|16690... 204 7e-58
>sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain (Beta-2 tubulin) gi|1399450|gb|AAB03267.1|
beta-tubulin 2
Length = 448
Score = 214 bits (544), Expect(2) = 7e-61
Identities = 101/107 (94%), Positives = 106/107 (98%)
Frame = +2
Query: 89 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 268
VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE
Sbjct: 342 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401
Query: 269 GMDEMEFTEAESNMNDLVSEYQQYQDATADDEGYDYEDEDEVQEEDS 409
GMDEMEFTEAESNMNDLVSEYQQYQDATAD++GY+YEDE+EV EED+
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDATADEDGYEYEDEEEVGEEDA 448
Score = 42.4 bits (98), Expect(2) = 7e-61
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 1 TASAMFRGKMSTKEVDEQMIKSRTR 75
TASAMFRGKMSTKEVDEQMI + +
Sbjct: 312 TASAMFRGKMSTKEVDEQMINVQNK 336
>sp|P37392|TBB1_LUPAL TUBULIN BETA-1 CHAIN gi|486734|pir||S35142 tubulin beta chain -
white lupine gi|402636|emb|CAA49736.1| Beta tubulin 1
[Lupinus albus]
Length = 447
Score = 211 bits (536), Expect(2) = 6e-60
Identities = 99/105 (94%), Positives = 104/105 (98%)
Frame = +2
Query: 89 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 268
VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE
Sbjct: 342 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401
Query: 269 GMDEMEFTEAESNMNDLVSEYQQYQDATADDEGYDYEDEDEVQEE 403
GMDEMEFTEAESNMNDLVSEYQQYQDATAD++GY+YEDE+E+ EE
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDATADEDGYEYEDEEEIGEE 446
Score = 42.4 bits (98), Expect(2) = 6e-60
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 1 TASAMFRGKMSTKEVDEQMIKSRTR 75
TASAMFRGKMSTKEVDEQMI + +
Sbjct: 312 TASAMFRGKMSTKEVDEQMINVQNK 336
>gb|AAK96884.1| beta tubulin [Arabidopsis thaliana] gi|20148289|gb|AAM10035.1| beta
tubulin [Arabidopsis thaliana]
Length = 449
Score = 204 bits (518), Expect(2) = 7e-58
Identities = 102/107 (95%), Positives = 104/107 (96%), Gaps = 2/107 (1%)
Frame = +2
Query: 89 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 268
VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE
Sbjct: 342 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401
Query: 269 GMDEMEFTEAESNMNDLVSEYQQYQDATAD-DEGYDY-EDEDEVQEE 403
GMDEMEFTEAESNMNDLVSEYQQYQDATAD +EGY+Y EDE EVQEE
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDATADEEEGYEYEEDEVEVQEE 448
Score = 42.4 bits (98), Expect(2) = 7e-58
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 1 TASAMFRGKMSTKEVDEQMIKSRTR 75
TASAMFRGKMSTKEVDEQMI + +
Sbjct: 312 TASAMFRGKMSTKEVDEQMINVQNK 336
>ref|NP_568437.1| Expressed protein; protein id: At5g23860.1, supported by cDNA:
gi_15451225, supported by cDNA: gi_20148288 [Arabidopsis
thaliana] gi|27735261|sp|P29516|TBB8_ARATH Tubulin
beta-8 chain gi|10176853|dbj|BAB10059.1| beta tubulin
[Arabidopsis thaliana]
Length = 449
Score = 204 bits (518), Expect(2) = 7e-58
Identities = 102/107 (95%), Positives = 104/107 (96%), Gaps = 2/107 (1%)
Frame = +2
Query: 89 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 268
VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE
Sbjct: 342 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401
Query: 269 GMDEMEFTEAESNMNDLVSEYQQYQDATAD-DEGYDY-EDEDEVQEE 403
GMDEMEFTEAESNMNDLVSEYQQYQDATAD +EGY+Y EDE EVQEE
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDATADEEEGYEYEEDEVEVQEE 448
Score = 42.4 bits (98), Expect(2) = 7e-58
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 1 TASAMFRGKMSTKEVDEQMIKSRTR 75
TASAMFRGKMSTKEVDEQMI + +
Sbjct: 312 TASAMFRGKMSTKEVDEQMINVQNK 336
>pir||JQ1592 tubulin beta-8 chain - Arabidopsis thaliana
gi|166908|gb|AAA32886.1| beta-8 tubulin
Length = 449
Score = 204 bits (518), Expect(2) = 7e-58
Identities = 102/107 (95%), Positives = 104/107 (96%), Gaps = 2/107 (1%)
Frame = +2
Query: 89 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 268
VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE
Sbjct: 342 VEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401
Query: 269 GMDEMEFTEAESNMNDLVSEYQQYQDATAD-DEGYDY-EDEDEVQEE 403
GMDEMEFTEAESNMNDLVSEYQQYQDATAD +EGY+Y EDE EVQEE
Sbjct: 402 GMDEMEFTEAESNMNDLVSEYQQYQDATADEEEGYEYEEDEVEVQEE 448
Score = 42.4 bits (98), Expect(2) = 7e-58
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 1 TASAMFRGKMSTKEVDEQMIKSRTR 75
TASAMFRGKMSTKEVDEQMI + +
Sbjct: 312 TASAMFRGKMSTKEVDEQMINVQNK 336
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614,718,779
Number of Sequences: 1393205
Number of extensions: 15250904
Number of successful extensions: 78608
Number of sequences better than 10.0: 1321
Number of HSP's better than 10.0 without gapping: 57187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71280
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
