Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013675A_C01 KMC013675A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198741.1| F-box protein family; protein id: At5g39250.1, ... 170 1e-41
dbj|BAB90211.1| B1078G07.33 [Oryza sativa (japonica cultivar-gro... 32 3.8
ref|NP_689483.1| hypothetical protein FLJ34922 [Homo sapiens] gi... 32 6.5
emb|CAD38606.1| hypothetical protein [Homo sapiens] 32 6.5
dbj|BAB85010.1| FLJ00257 protein [Homo sapiens] 32 6.5
>ref|NP_198741.1| F-box protein family; protein id: At5g39250.1, supported by cDNA:
gi_20259548 [Arabidopsis thaliana]
gi|9758854|dbj|BAB09380.1| gene_id:K3K3.16~unknown
protein [Arabidopsis thaliana]
gi|20259549|gb|AAM13894.1| unknown protein [Arabidopsis
thaliana] gi|21689711|gb|AAM67477.1| unknown protein
[Arabidopsis thaliana]
Length = 252
Score = 170 bits (430), Expect = 1e-41
Identities = 87/116 (75%), Positives = 102/116 (87%), Gaps = 3/116 (2%)
Frame = -2
Query: 535 PVEPRFTIPSGPNQNVSVSVMVGRKDSNKVARVINKSMFDYIDRSSYRALAFDYLDISPG 356
P EPRFTIP NQ+VSVSV+V R DS+KVAR+IN+S+FDYIDRSSYRALAF+YLD+SP
Sbjct: 139 PAEPRFTIPL--NQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYRALAFEYLDLSPC 196
Query: 355 YPFTTGIRAWISLLFM--EDGNED-LMHVFGIQMDFCDVANSKEEVLWLLDILDWK 197
YPF +GIRAWISLLFM ED N+D L+ VFGIQ+DF DVA++KEEVLWLLD+LDWK
Sbjct: 197 YPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVLWLLDMLDWK 252
>dbj|BAB90211.1| B1078G07.33 [Oryza sativa (japonica cultivar-group)]
gi|21952838|dbj|BAC06253.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 271
Score = 32.3 bits (72), Expect = 3.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 359 WLPFYDWHPSMDFVAIHGRWK*RSYACIWDPNGFL*C 249
WLP YD + + + WK ++ A + DPNG C
Sbjct: 12 WLPAYDQNAKASVILFNSDWKSKTCAFMHDPNGISSC 48
>ref|NP_689483.1| hypothetical protein FLJ34922 [Homo sapiens]
gi|21750783|dbj|BAC03835.1| unnamed protein product
[Homo sapiens]
Length = 901
Score = 31.6 bits (70), Expect = 6.5
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Frame = -3
Query: 405 VHHTEPWHLITWTYPLATLLRLASEHGFRCY----------------SWKMEMKILCMYL 274
VH +P IT+T + +L+ +G+ C SW +E K +C
Sbjct: 284 VHFCQPQRPITFTLKIVDVLKRGELYGYACMIRVNPFCCAVFSEAPNSWIVEDKYVCSLT 343
Query: 273 GSKWISVM 250
KW+ +M
Sbjct: 344 TEKWVGMM 351
>emb|CAD38606.1| hypothetical protein [Homo sapiens]
Length = 966
Score = 31.6 bits (70), Expect = 6.5
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Frame = -3
Query: 405 VHHTEPWHLITWTYPLATLLRLASEHGFRCY----------------SWKMEMKILCMYL 274
VH +P IT+T + +L+ +G+ C SW +E K +C
Sbjct: 349 VHFCQPQRPITFTLKIVDVLKRGELYGYACMIRVNPFCCAMFSEAPNSWIVEDKYVCSLT 408
Query: 273 GSKWISVM 250
KW+ +M
Sbjct: 409 TEKWVGMM 416
>dbj|BAB85010.1| FLJ00257 protein [Homo sapiens]
Length = 820
Score = 31.6 bits (70), Expect = 6.5
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Frame = -3
Query: 405 VHHTEPWHLITWTYPLATLLRLASEHGFRCY----------------SWKMEMKILCMYL 274
VH +P IT+T + +L+ +G+ C SW +E K +C
Sbjct: 203 VHFCQPQRPITFTLKIVDVLKRGELYGYACMIRVNPFCCAVFSEAPNSWIVEDKYVCSLT 262
Query: 273 GSKWISVM 250
KW+ +M
Sbjct: 263 TEKWVGMM 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,706,117
Number of Sequences: 1393205
Number of extensions: 10307595
Number of successful extensions: 21091
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21084
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
