Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013662A_C01 KMC013662A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193695.1| putative protein; protein id: At4g19600.1 [Arab... 48 8e-05
ref|NP_199332.1| putative protein; protein id: At5g45190.1 [Arab... 48 8e-05
dbj|BAC42172.1| unknown protein [Arabidopsis thaliana] 48 8e-05
ref|NP_193691.1| putative protein; protein id: At4g19560.1 [Arab... 42 0.005
dbj|BAA22523.1| viral core protein [Avian rotavirus RK3] 33 2.7
>ref|NP_193695.1| putative protein; protein id: At4g19600.1 [Arabidopsis thaliana]
gi|7486085|pir||T06153 hypothetical protein F24J7.161 -
Arabidopsis thaliana gi|4582488|emb|CAB40377.1| putative
protein [Arabidopsis thaliana]
gi|7268756|emb|CAB78962.1| putative protein [Arabidopsis
thaliana]
Length = 533
Score = 47.8 bits (112), Expect = 8e-05
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -3
Query: 528 HHIAAGALYLAAKFLNMDVAAH-ENI-CQEFQTTPSVLQDVSKPLMELF 388
HHIAAGA++LAAKFL + + + E + QEF TP L+DVS ++EL+
Sbjct: 211 HHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 259
>ref|NP_199332.1| putative protein; protein id: At5g45190.1 [Arabidopsis thaliana]
gi|9759604|dbj|BAB11392.1| contains similarity to
cyclin~gene_id:K18C1.7 [Arabidopsis thaliana]
Length = 583
Score = 47.8 bits (112), Expect = 8e-05
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -3
Query: 528 HHIAAGALYLAAKFLNMDVAAH-ENI-CQEFQTTPSVLQDVSKPLMELF 388
HHIAAGA++LAAKFL + + + E + QEF TP L+DVS ++EL+
Sbjct: 223 HHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 271
>dbj|BAC42172.1| unknown protein [Arabidopsis thaliana]
Length = 541
Score = 47.8 bits (112), Expect = 8e-05
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = -3
Query: 528 HHIAAGALYLAAKFLNMDVAAH-ENI-CQEFQTTPSVLQDVSKPLMELF 388
HHIAAGA++LAAKFL + + + E + QEF TP L+DVS ++EL+
Sbjct: 219 HHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 267
>ref|NP_193691.1| putative protein; protein id: At4g19560.1 [Arabidopsis thaliana]
gi|7486081|pir||T06149 hypothetical protein F24J7.120 -
Arabidopsis thaliana gi|2853083|emb|CAA16933.1| putative
protein [Arabidopsis thaliana]
gi|7268752|emb|CAB78958.1| putative protein [Arabidopsis
thaliana]
Length = 474
Score = 42.0 bits (97), Expect = 0.005
Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = -3
Query: 528 HHIAAGALYLAAKFLNMDVAAH-ENICQEFQTTPSVLQDV 412
HHIAAGA+ LAA+ +D+ ++ E +CQEF TP L+D+
Sbjct: 217 HHIAAGAILLAAELPTVDLQSYREVLCQEFDITPCQLEDL 256
>dbj|BAA22523.1| viral core protein [Avian rotavirus RK3]
Length = 397
Score = 32.7 bits (73), Expect = 2.7
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +3
Query: 3 ALRTDSIRYKMNAKHERI*QRIHKEVETLRNSRSTPSKPITEQTIYKPSFTP------MI 164
A ++DS+R NAK++RI E E + N + T ++KP+ P +I
Sbjct: 110 APQSDSLRQLSNAKYKRI--NYDNESEYIENWNLQNRRQRTGYLLHKPNILPYNNSFTLI 167
Query: 165 RDSPYQASVCNIL---NGSSI 218
R P +VC + NGS I
Sbjct: 168 RSQPAHDNVCGTIWLNNGSEI 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,858,256
Number of Sequences: 1393205
Number of extensions: 9171692
Number of successful extensions: 19115
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19093
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
