Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013657A_C01 KMC013657A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK73103.1|AF391808_1 hypothetical protein 4 [Zea mays] 123 1e-27
gb|AAF79318.1|AC002304_11 F14J16.17 [Arabidopsis thaliana] 116 2e-25
ref|NP_564704.1| hypothetical protein; protein id: At1g55915.1 [... 116 2e-25
ref|NP_476737.2| small optic lobes CG1391-PA gi|22833191|gb|AAF5... 52 5e-06
gb|AAM75061.1| RE21811p [Drosophila melanogaster] 52 5e-06
>gb|AAK73103.1|AF391808_1 hypothetical protein 4 [Zea mays]
Length = 339
Score = 123 bits (309), Expect = 1e-27
Identities = 54/105 (51%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Frame = -2
Query: 487 NSQSESQAGSSSAYLSSLPRL---LSGDNKTFHSEESAMWECPMCTLLNQTFAPICELCG 317
+ + + ++SA S+ R+ D T + +S+ WEC CTLLNQ APICE+CG
Sbjct: 228 DGKDKGSCSNTSAQPSTSSRIHIAARDDRTTSDALDSSKWECGACTLLNQPLAPICEVCG 287
Query: 316 TQQPKDVTTKYSTWSCKFCTLDNSVKMEKCSACDQWRYSHGPPMS 182
T +PK KY+TWSCKFCTL+NS K++KCSACDQWRYS+GPP++
Sbjct: 288 TTKPKIAKAKYTTWSCKFCTLENSTKLDKCSACDQWRYSYGPPVA 332
>gb|AAF79318.1|AC002304_11 F14J16.17 [Arabidopsis thaliana]
Length = 450
Score = 116 bits (290), Expect = 2e-25
Identities = 56/120 (46%), Positives = 70/120 (57%), Gaps = 8/120 (6%)
Frame = -2
Query: 517 QRSFGLERISNSQSESQAGSSSA--------YLSSLPRLLSGDNKTFHSEESAMWECPMC 362
+ SF + ++S G S A SS+P + N EES MWEC C
Sbjct: 323 EESFEIRCTKRNRSPGDQGPSCAKDVPNAGVMKSSIPLPSTSYNANQSREESTMWECAEC 382
Query: 361 TLLNQTFAPICELCGTQQPKDVTTKYSTWSCKFCTLDNSVKMEKCSACDQWRYSHGPPMS 182
TLLN + APICELC +PK+ K+ WSCKFCTL+N VK+EKC AC QWRYS+G P+S
Sbjct: 383 TLLNPSLAPICELCTAAKPKEREMKHKVWSCKFCTLENEVKLEKCEACGQWRYSYGAPLS 442
>ref|NP_564704.1| hypothetical protein; protein id: At1g55915.1 [Arabidopsis
thaliana]
Length = 458
Score = 116 bits (290), Expect = 2e-25
Identities = 56/120 (46%), Positives = 70/120 (57%), Gaps = 8/120 (6%)
Frame = -2
Query: 517 QRSFGLERISNSQSESQAGSSSA--------YLSSLPRLLSGDNKTFHSEESAMWECPMC 362
+ SF + ++S G S A SS+P + N EES MWEC C
Sbjct: 331 EESFEIRCTKRNRSPGDQGPSCAKDVPNAGVMKSSIPLPSTSYNANQSREESTMWECAEC 390
Query: 361 TLLNQTFAPICELCGTQQPKDVTTKYSTWSCKFCTLDNSVKMEKCSACDQWRYSHGPPMS 182
TLLN + APICELC +PK+ K+ WSCKFCTL+N VK+EKC AC QWRYS+G P+S
Sbjct: 391 TLLNPSLAPICELCTAAKPKEREMKHKVWSCKFCTLENEVKLEKCEACGQWRYSYGAPLS 450
>ref|NP_476737.2| small optic lobes CG1391-PA gi|22833191|gb|AAF50827.2| CG1391-PA
[Drosophila melanogaster]
Length = 906
Score = 52.0 bits (123), Expect = 5e-06
Identities = 24/65 (36%), Positives = 33/65 (49%), Gaps = 7/65 (10%)
Frame = -2
Query: 379 WECPMCTLLNQTFAPICELCGTQQPKDVTT-------KYSTWSCKFCTLDNSVKMEKCSA 221
W C CTL+N + A C +CG + K +++ K W+C CTL NS+ CSA
Sbjct: 114 WTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLRKGEFWTCSHCTLKNSLHSPVCSA 173
Query: 220 CDQWR 206
C R
Sbjct: 174 CKSHR 178
Score = 35.4 bits (80), Expect = 0.46
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 514 RSFGLERISNSQSESQAGSSSAYLSSLPRLLSGDNKTFHSEESAMWECPMCTLLNQTFAP 335
R+ + ++N + G SA + S SG S + W+CP CT N +
Sbjct: 292 RNISIAGLANYNLQQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQCPACTYDNCAASV 351
Query: 334 ICELCGT 314
+C++C +
Sbjct: 352 VCDICSS 358
>gb|AAM75061.1| RE21811p [Drosophila melanogaster]
Length = 1593
Score = 52.0 bits (123), Expect = 5e-06
Identities = 24/65 (36%), Positives = 33/65 (49%), Gaps = 7/65 (10%)
Frame = -2
Query: 379 WECPMCTLLNQTFAPICELCGTQQPKDVTT-------KYSTWSCKFCTLDNSVKMEKCSA 221
W C CTL+N + A C +CG + K +++ K W+C CTL NS+ CSA
Sbjct: 707 WTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLRKGEFWTCSHCTLKNSLHSPVCSA 766
Query: 220 CDQWR 206
C R
Sbjct: 767 CKSHR 771
Score = 35.4 bits (80), Expect = 0.46
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 514 RSFGLERISNSQSESQAGSSSAYLSSLPRLLSGDNKTFHSEESAMWECPMCTLLNQTFAP 335
R+ + ++N + G SA + S SG S + W+CP CT N +
Sbjct: 885 RNISIAGLANYNLQQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQCPACTYDNCAASV 944
Query: 334 ICELCGT 314
+C++C +
Sbjct: 945 VCDICSS 951
Score = 31.2 bits (69), Expect = 8.6
Identities = 23/94 (24%), Positives = 32/94 (33%), Gaps = 28/94 (29%)
Frame = -2
Query: 415 DNKTF--HSEESAMWECPMCTLL-NQTFAPICELCGTQ---------------------- 311
DNKT + S MW C C+ N+ + CE+C +
Sbjct: 633 DNKTQLGNGSRSKMWICIKCSYAYNRLWLQTCEMCEAKAEQQQQQLQLQQQQQQQQQHHH 692
Query: 310 ---QPKDVTTKYSTWSCKFCTLDNSVKMEKCSAC 218
Q + + W+CK CTL N C C
Sbjct: 693 HHLQQQQAAPRDEPWTCKKCTLVNYSTAMACVVC 726
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,607,628
Number of Sequences: 1393205
Number of extensions: 10137155
Number of successful extensions: 23981
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 22858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23889
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
