Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013656A_C01 KMC013656A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_607600.1| putative isoleucyl-tRNA synthetase [Streptococc... 32 3.8
ref|NP_269588.1| putative isoleucyl-tRNA synthetase [Streptococc... 32 3.8
ref|NP_664970.1| putative isoleucyl-tRNA synthetase [Streptococc... 32 6.4
ref|NP_703783.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.4
>ref|NP_607600.1| putative isoleucyl-tRNA synthetase [Streptococcus pyogenes
MGAS8232] gi|19748668|gb|AAL98099.1| putative
isoleucyl-tRNA synthetase [Streptococcus pyogenes
MGAS8232]
Length = 933
Score = 32.3 bits (72), Expect = 3.8
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 2 TGEDNGILLDNAGERYHGKYYRKLT 76
T ++ G++++NAG +HG++Y K+T
Sbjct: 349 TVDERGLMMENAGPDFHGQFYNKVT 373
>ref|NP_269588.1| putative isoleucyl-tRNA synthetase [Streptococcus pyogenes]
gi|13622601|gb|AAK34309.1| putative isoleucyl-tRNA
synthetase [Streptococcus pyogenes M1 GAS]
Length = 933
Score = 32.3 bits (72), Expect = 3.8
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 2 TGEDNGILLDNAGERYHGKYYRKLT 76
T ++ G++++NAG +HG++Y K+T
Sbjct: 349 TVDERGLMMENAGPDFHGQFYNKVT 373
>ref|NP_664970.1| putative isoleucyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
gi|28895608|ref|NP_801958.1| putative isoleucyl-tRNA
synthetase [Streptococcus pyogenes SSI-1]
gi|21904905|gb|AAM79773.1| putative isoleucyl-tRNA
synthetase [Streptococcus pyogenes MGAS315]
gi|28810857|dbj|BAC63791.1| putative isoleucyl-tRNA
synthetase [Streptococcus pyogenes SSI-1]
Length = 933
Score = 31.6 bits (70), Expect = 6.4
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 2 TGEDNGILLDNAGERYHGKYYRKLT 76
T ++ G++++NAG +HG++Y K+T
Sbjct: 349 TVDERGLMMENAGPDFHGQFYDKVT 373
>ref|NP_703783.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498444|emb|CAD50395.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1864
Score = 31.2 bits (69), Expect = 8.4
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +2
Query: 20 ILLDNAGERYHGKYYRKLTDSLTNNRIGSFPTKTMHQKLIDSSNLLSTTRSNQMNQKTIY 199
I +D + + + K Y K+ D L + +I T +K+I+ N+ NQ+
Sbjct: 1750 IYIDKSKNKMNDKNYEKMVDKLHDEQIKIHSLLTEKEKIINEKNIQINHLENQLQSWADE 1809
Query: 200 IINFVTDAISYGTLV 244
N+V A + L+
Sbjct: 1810 ATNWVVMADKHAKLI 1824
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,441,007
Number of Sequences: 1393205
Number of extensions: 8479038
Number of successful extensions: 19041
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19008
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
