Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013616A_C01 KMC013616A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705693.1| Nice-4 protein homolog isoform 2 [Mus musculus]... 32 4.9
dbj|BAC33295.1| unnamed protein product [Mus musculus] 32 4.9
dbj|BAC29462.1| unnamed protein product [Mus musculus] 32 4.9
dbj|BAC40514.1| unnamed protein product [Mus musculus] 32 4.9
ref|XP_130965.2| Nice-4 protein homolog [Mus musculus] gi|221356... 32 4.9
>ref|NP_705693.1| Nice-4 protein homolog isoform 2 [Mus musculus]
gi|23271826|gb|AAH23906.1| Similar to KIAA0144 gene
product [Mus musculus]
Length = 1067
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 326 FSRTQSIIPTSSFPPIISISISISSGSILSNNLSSASLI 442
FS T S + S+ PP++S+S S++SGS L +L S S +
Sbjct: 736 FSTTSSTV--SAPPPVVSVSSSLNSGSSLGLSLGSNSTV 772
>dbj|BAC33295.1| unnamed protein product [Mus musculus]
Length = 1112
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 326 FSRTQSIIPTSSFPPIISISISISSGSILSNNLSSASLI 442
FS T S + S+ PP++S+S S++SGS L +L S S +
Sbjct: 761 FSTTSSTV--SAPPPVVSVSSSLNSGSSLGLSLGSNSTV 797
>dbj|BAC29462.1| unnamed protein product [Mus musculus]
Length = 389
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 326 FSRTQSIIPTSSFPPIISISISISSGSILSNNLSSASLI 442
FS T S + S+ PP++S+S S++SGS L +L S S +
Sbjct: 38 FSTTSSTV--SAPPPVVSVSSSLNSGSSLGLSLGSNSTV 74
>dbj|BAC40514.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 326 FSRTQSIIPTSSFPPIISISISISSGSILSNNLSSASLI 442
FS T S + S+ PP++S+S S++SGS L +L S S +
Sbjct: 767 FSTTSSTV--SAPPPVVSVSSSLNSGSSLGLSLGSNSTV 803
>ref|XP_130965.2| Nice-4 protein homolog [Mus musculus] gi|22135657|gb|AAH29075.1|
Similar to KIAA0144 gene product [Mus musculus]
Length = 1105
Score = 31.6 bits (70), Expect = 4.9
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 326 FSRTQSIIPTSSFPPIISISISISSGSILSNNLSSASLI 442
FS T S + S+ PP++S+S S++SGS L +L S S +
Sbjct: 756 FSTTSSTV--SAPPPVVSVSSSLNSGSSLGLSLGSNSTV 792
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,557,656
Number of Sequences: 1393205
Number of extensions: 8797826
Number of successful extensions: 20188
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20180
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
