Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013608A_C01 KMC013608A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195272.1| putative protein; protein id: At4g35470.1, supp... 38 0.080
dbj|BAC34964.1| unnamed protein product [Mus musculus] 32 3.4
dbj|BAC34913.1| unnamed protein product [Mus musculus] gi|263425... 32 3.4
ref|NP_722496.1| RIKEN cDNA D330017N19; synaptic glycoprotein SC... 32 3.4
dbj|BAC34928.1| unnamed protein product [Mus musculus] 32 3.4
>ref|NP_195272.1| putative protein; protein id: At4g35470.1, supported by cDNA:
gi_18252196 [Arabidopsis thaliana]
gi|7485517|pir||T41744 hypothetical protein F15J1.40 -
Arabidopsis thaliana gi|5830789|emb|CAB54875.1| putative
protein [Arabidopsis thaliana]
gi|7270498|emb|CAB80263.1| putative protein [Arabidopsis
thaliana] gi|18252197|gb|AAL61931.1| putative protein
[Arabidopsis thaliana] gi|22136104|gb|AAM91130.1|
putative protein [Arabidopsis thaliana]
Length = 549
Score = 37.7 bits (86), Expect = 0.080
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -2
Query: 493 LKQTKSWAQICFFSKSNKRKR 431
+K KSW Q+CFFSKSNKRK+
Sbjct: 523 VKPKKSWVQMCFFSKSNKRKQ 543
>dbj|BAC34964.1| unnamed protein product [Mus musculus]
Length = 338
Score = 32.3 bits (72), Expect = 3.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 87 SWVSPPPSITIWPVGLCTLLSTLKTTEIQRKLNRKLKLYREKIRIYRTRNLQFVP 251
SW+S PVG+ T+L T++ + RK K K+YR+K Y R +P
Sbjct: 284 SWISFTVMTQTLPVGIFTILMTIQMSLWARK---KHKIYRKKFNSYVHRKSAIIP 335
>dbj|BAC34913.1| unnamed protein product [Mus musculus] gi|26342508|dbj|BAC34916.1|
unnamed protein product [Mus musculus]
Length = 361
Score = 32.3 bits (72), Expect = 3.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 87 SWVSPPPSITIWPVGLCTLLSTLKTTEIQRKLNRKLKLYREKIRIYRTRNLQFVP 251
SW+S PVG+ T+L T++ + RK K K+YR+K Y R +P
Sbjct: 307 SWISFTVMTQTLPVGIFTILMTIQMSLWARK---KHKIYRKKFNSYVHRKSAIIP 358
>ref|NP_722496.1| RIKEN cDNA D330017N19; synaptic glycoprotein SC2-like [Mus
musculus] gi|23957582|gb|AAN40798.1| synaptic
glycoprotein SC2-like protein [Mus musculus]
Length = 361
Score = 32.3 bits (72), Expect = 3.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 87 SWVSPPPSITIWPVGLCTLLSTLKTTEIQRKLNRKLKLYREKIRIYRTRNLQFVP 251
SW+S PVG+ T+L T++ + RK K K+YR+K Y R +P
Sbjct: 307 SWISFTVMTQTLPVGIFTILMTIQMSLWARK---KHKIYRKKFNSYVHRKSAIIP 358
>dbj|BAC34928.1| unnamed protein product [Mus musculus]
Length = 327
Score = 32.3 bits (72), Expect = 3.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 87 SWVSPPPSITIWPVGLCTLLSTLKTTEIQRKLNRKLKLYREKIRIYRTRNLQFVP 251
SW+S PVG+ T+L T++ + RK K K+YR+K Y R +P
Sbjct: 273 SWISFTVMTQTLPVGIFTILMTIQMSLWARK---KHKIYRKKFNSYVHRKSAIIP 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,091,496
Number of Sequences: 1393205
Number of extensions: 9467175
Number of successful extensions: 19348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19344
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
