Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013597A_C01 KMC013597A_c01
(694 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S20941 protochlorophyllide reductase (EC 1.3.1.33) precurso... 317 8e-86
sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplast ... 313 2e-84
sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplast pre... 311 7e-84
gb|AAD20020.2| NADPH-protochlorophyllide oxidoreductase [Vigna r... 287 1e-76
gb|AAF89208.1|AF279251_1 NADPH-protochlorophyllide oxidoreductas... 287 1e-76
>pir||S20941 protochlorophyllide reductase (EC 1.3.1.33) precursor - garden pea
Length = 400
Score = 317 bits (813), Expect = 8e-86
Identities = 165/200 (82%), Positives = 183/200 (91%), Gaps = 4/200 (2%)
Frame = +2
Query: 107 LVPASLSMLREGK---SLKDSTLFGLS-LSEPLKADFSSSALRCKREFKQKFGAVRAETA 274
++PAS S+ +EGK SLKDSTLFG+S LS+ LK DF+SSALRCKRE +QK GAVRAETA
Sbjct: 8 MLPASFSIPKEGKIGASLKDSTLFGVSSLSDSLKGDFTSSALRCKRELRQKVGAVRAETA 67
Query: 275 ATASPAVNSSAPEAKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAAR 454
A A+PAVN S+ E KKTLRKG VVITGASSGLGLATAKALAE+GKWHVIMACRD+LKAAR
Sbjct: 68 APATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAAR 127
Query: 455 AAKSAGIAKENYSIMHLDLSSLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTA 634
AAKSAG+AKENY+IMHLDL+SLDSVRQFVDNFRRSEMPLDVL+ NAAVY PTAKEP+FTA
Sbjct: 128 AAKSAGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTA 187
Query: 635 DGFELSVGTNHLGHFLLSRL 694
DGFE+SVGTNHLGHFLLSRL
Sbjct: 188 DGFEISVGTNHLGHFLLSRL 207
>sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplast precursor (PCR)
(NADPH-protochlorophyllide oxidoreductase) (POR)
gi|1084321|pir||JC4146 protochlorophyllide reductase (EC
1.3.1.33) precursor - cucumber
gi|2244614|dbj|BAA21089.1| NADPH-protochlorophyllide
oxidoreductase [Cucumis sativus]
Length = 398
Score = 313 bits (801), Expect = 2e-84
Identities = 159/199 (79%), Positives = 177/199 (88%), Gaps = 3/199 (1%)
Frame = +2
Query: 107 LVPASLSMLREGKS---LKDSTLFGLSLSEPLKADFSSSALRCKREFKQKFGAVRAETAA 277
LV +LS+ +EGKS LKDS+LFG+S S+ LK++FSSS LRCKRE Q+ GA+RA+T A
Sbjct: 8 LVSPALSIPKEGKSSVCLKDSSLFGISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTA 67
Query: 278 TASPAVNSSAPEAKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAARA 457
T SPAVN + P+ KKTLRKG VVITGASSGLGLATAKALAETGKWHVIMACRDFLKA RA
Sbjct: 68 TESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERA 127
Query: 458 AKSAGIAKENYSIMHLDLSSLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTAD 637
AKSAGI KENY++MHLDL+SLDSVRQFVDNFR+S PLDVLVCNAAVYLPTAKEPTFTA+
Sbjct: 128 AKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAE 187
Query: 638 GFELSVGTNHLGHFLLSRL 694
GFELSVGTNHLGHFLLSRL
Sbjct: 188 GFELSVGTNHLGHFLLSRL 206
>sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplast precursor (PCR)
(NADPH-protochlorophyllide oxidoreductase) (POR)
gi|20830|emb|CAA44786.1| protochlorophyllide reductase
[Pisum sativum]
Length = 399
Score = 311 bits (796), Expect = 7e-84
Identities = 164/200 (82%), Positives = 182/200 (91%), Gaps = 4/200 (2%)
Frame = +2
Query: 107 LVPASLSMLREGK---SLKDSTLFGLS-LSEPLKADFSSSALRCKREFKQKFGAVRAETA 274
++PAS S+ +EGK SLKDSTLFG+S LS+ LK DF+SSALRCK E +QK GAVRAETA
Sbjct: 8 MLPASFSIPKEGKIGASLKDSTLFGVSSLSDSLKGDFTSSALRCK-ELRQKVGAVRAETA 66
Query: 275 ATASPAVNSSAPEAKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAAR 454
A A+PAVN S+ E KKTLRKG VVITGASSGLGLATAKALAE+GKWHVIMACRD+LKAAR
Sbjct: 67 APATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAAR 126
Query: 455 AAKSAGIAKENYSIMHLDLSSLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTA 634
AAKSAG+AKENY+IMHLDL+SLDSVRQFVDNFRRSEMPLDVL+ NAAVY PTAKEP+FTA
Sbjct: 127 AAKSAGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTA 186
Query: 635 DGFELSVGTNHLGHFLLSRL 694
DGFE+SVGTNHLGHFLLSRL
Sbjct: 187 DGFEISVGTNHLGHFLLSRL 206
>gb|AAD20020.2| NADPH-protochlorophyllide oxidoreductase [Vigna radiata]
Length = 369
Score = 287 bits (734), Expect = 1e-76
Identities = 147/199 (73%), Positives = 170/199 (84%), Gaps = 3/199 (1%)
Frame = +2
Query: 107 LVPASLSMLREGK---SLKDSTLFGLSLSEPLKADFSSSALRCKREFKQKFGAVRAETAA 277
LV S+ +EGK SL+++T+FGLSL + LKADFSS + CKREF++K +R ++ A
Sbjct: 8 LVSGYFSVAKEGKPGMSLRNTTMFGLSLEDALKADFSSLSFSCKREFQKKVCPLRVQSVA 67
Query: 278 TASPAVNSSAPEAKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAARA 457
T +P V ++PE KKTLRKG V+ITGASSGLGLATAKALAETGKWHVIMACRDFLKA RA
Sbjct: 68 T-TPGVTKASPEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERA 126
Query: 458 AKSAGIAKENYSIMHLDLSSLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTAD 637
AKS+GI+KENY++MHLDL+SLDSVRQFVDNFR+S PLDVLVCNAAVYLPTA EPT TAD
Sbjct: 127 AKSSGISKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTASEPTHTAD 186
Query: 638 GFELSVGTNHLGHFLLSRL 694
GFELSVGTNHLGHFLLSRL
Sbjct: 187 GFELSVGTNHLGHFLLSRL 205
>gb|AAF89208.1|AF279251_1 NADPH-protochlorophyllide oxidoreductase [Vigna radiata]
Length = 398
Score = 287 bits (734), Expect = 1e-76
Identities = 147/199 (73%), Positives = 170/199 (84%), Gaps = 3/199 (1%)
Frame = +2
Query: 107 LVPASLSMLREGK---SLKDSTLFGLSLSEPLKADFSSSALRCKREFKQKFGAVRAETAA 277
LV S+ +EGK SL+++T+FGLSL + LKADFSS + CKREF++K +R ++ A
Sbjct: 8 LVSGYFSVAKEGKPGMSLRNTTMFGLSLEDALKADFSSLSFSCKREFQKKVCPLRVQSVA 67
Query: 278 TASPAVNSSAPEAKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAARA 457
T +P V ++PE KKTLRKG V+ITGASSGLGLATAKALAETGKWHVIMACRDFLKA RA
Sbjct: 68 T-TPGVTKASPEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERA 126
Query: 458 AKSAGIAKENYSIMHLDLSSLDSVRQFVDNFRRSEMPLDVLVCNAAVYLPTAKEPTFTAD 637
AKS+GI+KENY++MHLDL+SLDSVRQFVDNFR+S PLDVLVCNAAVYLPTA EPT TAD
Sbjct: 127 AKSSGISKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTASEPTHTAD 186
Query: 638 GFELSVGTNHLGHFLLSRL 694
GFELSVGTNHLGHFLLSRL
Sbjct: 187 GFELSVGTNHLGHFLLSRL 205
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,442,927
Number of Sequences: 1393205
Number of extensions: 13508529
Number of successful extensions: 49355
Number of sequences better than 10.0: 1726
Number of HSP's better than 10.0 without gapping: 46387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48729
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
