Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013582A_C01 KMC013582A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189307.2| RING zinc finger protein, putative; protein id:... 46 8e-11
emb|CAA66823.1| unknown [Arabidopsis thaliana] 42 0.006
gb|EAA13224.1| ebiP3468 [Anopheles gambiae str. PEST] 33 2.2
ref|NP_703998.1| erythrocyte membrane-associated antigen [Plasmo... 33 2.9
dbj|BAA88181.1| unnamed protein product [Oryza sativa (japonica ... 33 2.9
>ref|NP_189307.2| RING zinc finger protein, putative; protein id: At3g26730.1,
supported by cDNA: gi_18377742 [Arabidopsis thaliana]
gi|11994306|dbj|BAB01736.1|
emb|CAA66822.1~gene_id:MLJ15.12~unknown protein
[Arabidopsis thaliana] gi|18377743|gb|AAL67021.1|
putative RING zinc finger protein [Arabidopsis thaliana]
gi|27754738|gb|AAO22812.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 772
Score = 46.2 bits (108), Expect(2) = 8e-11
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = -3
Query: 450 PYNDHKSTDSS----GTAGSRNGETPSYSNVISRAESNNSLNAPKTNDVGKKGKEPHRVL 283
P N S+ SS T G+RN S+++V SR + AP + GK+GK+ RVL
Sbjct: 707 PTNVQSSSSSSEVSNATTGARNTNITSFASVASRTTTPM---APTVKEPGKRGKKQSRVL 763
Query: 282 LSTAGVRRY 256
LST VRRY
Sbjct: 764 LSTTSVRRY 772
Score = 41.6 bits (96), Expect(2) = 8e-11
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -2
Query: 544 GERRLFSSVTRLGFAAGHDSPSL 476
GER FS VTRLGFAAGHDSP+L
Sbjct: 681 GERSSFSHVTRLGFAAGHDSPNL 703
>emb|CAA66823.1| unknown [Arabidopsis thaliana]
Length = 191
Score = 41.6 bits (96), Expect = 0.006
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -2
Query: 544 GERRLFSSVTRLGFAAGHDSPSL 476
GER FS VTRLGFAAGHDSP+L
Sbjct: 119 GERSSFSHVTRLGFAAGHDSPNL 141
>gb|EAA13224.1| ebiP3468 [Anopheles gambiae str. PEST]
Length = 804
Score = 33.1 bits (74), Expect = 2.2
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 12/59 (20%)
Frame = -3
Query: 483 HHCQYQKRTSGPYNDHKSTDSSGTAGSRNGETPSYS------------NVISRAESNNS 343
HH Q Q+ GP DH + + +G + ETPS++ N IS SNNS
Sbjct: 358 HHHQGQQNLQGPIGDHGNREMNGDRMMNHYETPSHNRQHMDPLNQSLLNPISGVTSNNS 416
>ref|NP_703998.1| erythrocyte membrane-associated antigen [Plasmodium falciparum 3D7]
gi|23498736|emb|CAD50806.1| erythrocyte
membrane-associated antigen [Plasmodium falciparum 3D7]
Length = 2283
Score = 32.7 bits (73), Expect = 2.9
Identities = 18/66 (27%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Frame = -3
Query: 510 LVLLLVMILHHCQYQKRTSGPYNDHKST--DSSGTAGSRNGETPSYSNVISRAESNNSLN 337
+++++V+I+ + + K GP + T ++S N E +Y+N++S +NN N
Sbjct: 206 IIIIIVVIIINREMNKNNEGPNSSFNETKLNNSSNFHINNKEKKNYNNILSNNNNNNINN 265
Query: 336 APKTND 319
K ND
Sbjct: 266 --KNND 269
>dbj|BAA88181.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 257
Score = 32.7 bits (73), Expect = 2.9
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -3
Query: 468 QKRTSGPYNDHKSTDSSGTAGSRNGETPSYSNVISRAESNNSLNAPKTNDVGKKGKEPHR 289
QKR +K T ++ + G + V+ R ++ + + NDVGK G+E
Sbjct: 188 QKRAEAAAGGNKGTAAATATATNTGGEAAAEEVMMRVKAADQMTGQAFNDVGKMGEEGTG 247
Query: 288 VLLSTAGVRR 259
+ G RR
Sbjct: 248 MAAGDGGRRR 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,002,614
Number of Sequences: 1393205
Number of extensions: 9833878
Number of successful extensions: 25356
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25301
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
