Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013576A_C01 KMC013576A_c01
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica ... 236 3e-61
dbj|BAA95777.1| gene_id:K20I9.6~unknown protein [Arabidopsis tha... 231 5e-60
ref|NP_188306.2| unknown protein; protein id: At3g16830.1, suppo... 231 5e-60
gb|AAO42071.1| unknown protein [Arabidopsis thaliana] gi|2882770... 229 2e-59
gb|AAN62336.1|AF506028_3 CTV.2 [Poncirus trifoliata] 226 2e-58
>dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 930
Score = 236 bits (601), Expect = 3e-61
Identities = 117/128 (91%), Positives = 124/128 (96%)
Frame = +3
Query: 258 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 437
M+SLSRELVFLILQFLDEEKFKE+VHKLE+ESGFFFNMKYFEEKV AGEW+EVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGF 60
Query: 438 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 617
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+ILV DLKVFSTFNEELYKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLT 120
Query: 618 LTNFRENE 641
L NFRENE
Sbjct: 121 LENFRENE 128
>dbj|BAA95777.1| gene_id:K20I9.6~unknown protein [Arabidopsis thaliana]
Length = 1161
Score = 231 bits (590), Expect = 5e-60
Identities = 115/128 (89%), Positives = 122/128 (94%)
Frame = +3
Query: 258 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 437
M+SLSRELVFLILQFLDEEKFKESVHKLE+ESGFFFN+KYFEEK AGEW+EVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 438 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 617
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAVEIL DLKVF+TFNEELYKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 618 LTNFRENE 641
L NFRENE
Sbjct: 121 LENFRENE 128
>ref|NP_188306.2| unknown protein; protein id: At3g16830.1, supported by cDNA:
gi_18377647 [Arabidopsis thaliana]
Length = 1131
Score = 231 bits (590), Expect = 5e-60
Identities = 115/128 (89%), Positives = 122/128 (94%)
Frame = +3
Query: 258 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 437
M+SLSRELVFLILQFLDEEKFKESVHKLE+ESGFFFN+KYFEEK AGEW+EVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 438 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 617
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAVEIL DLKVF+TFNEELYKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 618 LTNFRENE 641
L NFRENE
Sbjct: 121 LENFRENE 128
>gb|AAO42071.1| unknown protein [Arabidopsis thaliana] gi|28827708|gb|AAO50698.1|
unknown protein [Arabidopsis thaliana]
Length = 1108
Score = 229 bits (585), Expect = 2e-59
Identities = 114/128 (89%), Positives = 123/128 (96%)
Frame = +3
Query: 258 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 437
M+SLSRELVFLILQFL+EEKFKESVH+LEKESGFFFN KYF+EKV AGEW++VE YL+GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 438 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 617
TKVDDNRYSMKIFFEIRKQKYLEALDRQ+KAKAVEILV DL+VFSTFNEELYKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 618 LTNFRENE 641
L NFRENE
Sbjct: 121 LQNFRENE 128
>gb|AAN62336.1|AF506028_3 CTV.2 [Poncirus trifoliata]
Length = 1127
Score = 226 bits (576), Expect = 2e-58
Identities = 111/128 (86%), Positives = 122/128 (94%)
Frame = +3
Query: 258 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 437
M+SLSRELVFLILQFLDEEKFKE+VHKLE+ESGFFFNMKYFE++V G W++VEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 438 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 617
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+AKAVEILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 618 LTNFRENE 641
L NFRENE
Sbjct: 121 LENFRENE 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,918,726
Number of Sequences: 1393205
Number of extensions: 12061508
Number of successful extensions: 49985
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 43673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49488
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
