Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013573A_C01 KMC013573A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62343.1|AF506028_10 nodulin-like protein [Poncirus trifoli... 62 6e-09
ref|NP_178168.1| nodulin-like protein; protein id: At1g80530.1, ... 54 1e-06
dbj|BAC22240.1| nodulin-like protein [Oryza sativa (japonica cul... 51 1e-05
pir||T25469 hypothetical protein B0507.8 - Caenorhabditis elegans 35 0.74
pir||A45773 kelch protein, long form - fruit fly (Drosophila mel... 32 6.2
>gb|AAN62343.1|AF506028_10 nodulin-like protein [Poncirus trifoliata]
Length = 564
Score = 61.6 bits (148), Expect = 6e-09
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -3
Query: 532 VCGAGIILSIILTLRIKPVYQMLYAGGSFKLPQRS 428
VCG G ILSIILT+RI+PVYQMLYAGGSF++PQ S
Sbjct: 528 VCGLGTILSIILTIRIRPVYQMLYAGGSFRVPQAS 562
>ref|NP_178168.1| nodulin-like protein; protein id: At1g80530.1, supported by cDNA:
gi_14334879, supported by cDNA: gi_15810606 [Arabidopsis
thaliana] gi|25370603|pir||C96837 nodulin-like protein,
38383-40406 [imported] - Arabidopsis thaliana
gi|6730730|gb|AAF27120.1|AC018849_8 nodulin-like
protein; 38383-40406 [Arabidopsis thaliana]
gi|14334880|gb|AAK59618.1| putative nodulin protein
[Arabidopsis thaliana] gi|15810607|gb|AAL07191.1|
putative nodulin protein [Arabidopsis thaliana]
Length = 561
Score = 53.9 bits (128), Expect = 1e-06
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = -3
Query: 532 VCGAGIILSIILTLRIKPVYQMLYAGGSFKLPQRS*SH 419
VCG G +LSIILT+RI+PVYQ LYA GSF+L +S H
Sbjct: 524 VCGLGTLLSIILTVRIRPVYQALYASGSFRLQPQSTGH 561
>dbj|BAC22240.1| nodulin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 567
Score = 50.8 bits (120), Expect = 1e-05
Identities = 23/35 (65%), Positives = 28/35 (79%)
Frame = -3
Query: 532 VCGAGIILSIILTLRIKPVYQMLYAGGSFKLPQRS 428
V G +LSI+LT+RI+PVYQMLYAGGSF P+ S
Sbjct: 531 VASLGTLLSIVLTVRIRPVYQMLYAGGSFSQPRSS 565
>pir||T25469 hypothetical protein B0507.8 - Caenorhabditis elegans
Length = 772
Score = 34.7 bits (78), Expect = 0.74
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +2
Query: 323 ADPCIYNTAVMADTIDLSSALFYSMFNFITVLVTSRSLRQLERTSGIKHLVDWLNSQCQN 502
+DPC Y+ + + + LS +LFYS F + + R++ R + +K D +N Q Q
Sbjct: 340 SDPCHYSLKIFSFNVCLSFSLFYSHFCIHCTMSSKYEERKVARENELKEERDKINRQVQQ 399
Query: 503 NA 508
+
Sbjct: 400 KS 401
>pir||A45773 kelch protein, long form - fruit fly (Drosophila melanogaster)
Length = 1476
Score = 31.6 bits (70), Expect = 6.2
Identities = 21/66 (31%), Positives = 26/66 (38%)
Frame = +2
Query: 272 ARCQNFELQRLHRGFIDADPCIYNTAVMADTIDLSSALFYSMFNFITVLVTSRSLRQLER 451
A C N E +R G + CIY T LSSA Y I + S S R+
Sbjct: 476 ANCSNMEARRSTLGVAALNGCIYAVGGFDGTTGLSSAEMYDPKTDIWRFIASMSTRRSSV 535
Query: 452 TSGIKH 469
G+ H
Sbjct: 536 GVGVVH 541
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,423,334
Number of Sequences: 1393205
Number of extensions: 7458461
Number of successful extensions: 12647
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12643
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
