Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013557A_C01 KMC013557A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84773 hypothetical protein At2g35860 [imported] - Arabidop... 71 3e-12
ref|NP_181130.2| unknown protein; protein id: At2g35860.1, suppo... 71 3e-12
ref|NP_196257.1| putative protein; protein id: At5g06390.1 [Arab... 68 3e-11
ref|NP_566398.1| expressed protein; protein id: At3g11700.1, sup... 67 8e-11
gb|AAF02137.1|AC009918_9 unknown protein [Arabidopsis thaliana] 67 8e-11
>pir||H84773 hypothetical protein At2g35860 [imported] - Arabidopsis thaliana
gi|4510383|gb|AAD21471.1| unknown protein [Arabidopsis
thaliana]
Length = 475
Score = 71.2 bits (173), Expect(2) = 3e-12
Identities = 43/93 (46%), Positives = 55/93 (58%), Gaps = 1/93 (1%)
Frame = +3
Query: 207 QLVEKAMLLQTFSNKQWALYTSPSSLPKMKL*QLRLDPDFKRFLLEPRNLHSLQTLLKSH 386
+LVEKA+LLQT + P+ + LDP FK FLLEPRNL SLQ+LL H
Sbjct: 53 ELVEKALLLQTLEEAV-GKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFH 111
Query: 387 IIPMRISGSENAPGSTHHRTLAGHH-HLRLETN 482
I+P RI+ + S HHRTL+ H HL ++ N
Sbjct: 112 ILPKRITSPQWPSLSHHHRTLSNDHLHLTVDVN 144
Score = 21.2 bits (43), Expect(2) = 3e-12
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 151 NSNSILVALL 180
NSNS+LVALL
Sbjct: 35 NSNSVLVALL 44
>ref|NP_181130.2| unknown protein; protein id: At2g35860.1, supported by cDNA:
gi_20260579 [Arabidopsis thaliana]
gi|20260580|gb|AAM13188.1| unknown protein [Arabidopsis
thaliana]
Length = 445
Score = 71.2 bits (173), Expect(2) = 3e-12
Identities = 43/93 (46%), Positives = 55/93 (58%), Gaps = 1/93 (1%)
Frame = +3
Query: 207 QLVEKAMLLQTFSNKQWALYTSPSSLPKMKL*QLRLDPDFKRFLLEPRNLHSLQTLLKSH 386
+LVEKA+LLQT + P+ + LDP FK FLLEPRNL SLQ+LL H
Sbjct: 53 ELVEKALLLQTLEEAV-GKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFH 111
Query: 387 IIPMRISGSENAPGSTHHRTLAGHH-HLRLETN 482
I+P RI+ + S HHRTL+ H HL ++ N
Sbjct: 112 ILPKRITSPQWPSLSHHHRTLSNDHLHLTVDVN 144
Score = 21.2 bits (43), Expect(2) = 3e-12
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 151 NSNSILVALL 180
NSNS+LVALL
Sbjct: 35 NSNSVLVALL 44
>ref|NP_196257.1| putative protein; protein id: At5g06390.1 [Arabidopsis thaliana]
gi|9758419|dbj|BAB08961.1|
gb|AAF02137.1~gene_id:MHF15.9~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 465
Score = 67.8 bits (164), Expect(2) = 3e-11
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Frame = +3
Query: 207 QLVEKAMLLQTFSNKQWALYTSPSSLPKMKL*QLRLDPDFKRFLLEPRNLHSLQTLLKSH 386
+LVEKA+LLQT + + P+ + + LDP+FKRFLLEP NL SLQTLL H
Sbjct: 61 ELVEKALLLQTLEDAV-GRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFH 119
Query: 387 IIPMRISGSE---NAPGSTHHRTLAGHHHLRLETNGTGRQ 497
IIP R+ ++ G H TL G+ +RL +NG G++
Sbjct: 120 IIPNRVGSNQWPSEESGRVKHHTL-GNDQVRL-SNGQGKK 157
Score = 21.2 bits (43), Expect(2) = 3e-11
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 151 NSNSILVALL 180
NSNS+LVALL
Sbjct: 43 NSNSVLVALL 52
>ref|NP_566398.1| expressed protein; protein id: At3g11700.1, supported by cDNA:
gi_15810316, supported by cDNA: gi_16604518 [Arabidopsis
thaliana] gi|15810317|gb|AAL07046.1| unknown protein
[Arabidopsis thaliana] gi|16604519|gb|AAL24265.1|
AT3g11700/T19F11_10 [Arabidopsis thaliana]
gi|22136768|gb|AAM91728.1| unknown protein [Arabidopsis
thaliana]
Length = 462
Score = 66.6 bits (161), Expect(2) = 8e-11
Identities = 45/100 (45%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Frame = +3
Query: 207 QLVEKAMLLQTFSNKQWALYTSPSSLPKMKL*QLRLDPDFKRFLLEPRNLHSLQTLLKSH 386
+LVEKA+LLQT + + P+ + + LDPDFKRFLL+P NL SLQTLL SH
Sbjct: 58 ELVEKALLLQTLEDAV-GRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSH 116
Query: 387 IIPMRISGS---ENAPGSTHHRTLAGHHHLRLE----TNG 485
IIP R+ + E G H TL L L TNG
Sbjct: 117 IIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNG 156
Score = 41.6 bits (96), Expect = 0.006
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Frame = +2
Query: 44 IYGGT--TIFYTSLLLFSIFSISSQSSQIPGSGPGSNQTPTPSW*HFWHSHSTELAAARR 217
IYG + TIF++ L + ++ S I GSG ++ + + S TELA
Sbjct: 5 IYGCSVITIFFSFFFLLNASALESGHHNITGSGQINSNSVLVA---LLDSRYTELAELVE 61
Query: 218 ESNASSNLQQQTVGSLHITIFAPKNEALAAETRP*FQ--ALPPRTQKPSLSPDTSQ-VPH 388
++ L + VG +ITIFAP+NEAL + P F+ L P K + S +P
Sbjct: 62 KALLLQTL-EDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPK 120
Query: 389 HPHENQWIRKRS 424
NQW + S
Sbjct: 121 RVGSNQWPEENS 132
Score = 21.2 bits (43), Expect(2) = 8e-11
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 151 NSNSILVALL 180
NSNS+LVALL
Sbjct: 40 NSNSVLVALL 49
>gb|AAF02137.1|AC009918_9 unknown protein [Arabidopsis thaliana]
Length = 447
Score = 66.6 bits (161), Expect(2) = 8e-11
Identities = 45/100 (45%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Frame = +3
Query: 207 QLVEKAMLLQTFSNKQWALYTSPSSLPKMKL*QLRLDPDFKRFLLEPRNLHSLQTLLKSH 386
+LVEKA+LLQT + + P+ + + LDPDFKRFLL+P NL SLQTLL SH
Sbjct: 58 ELVEKALLLQTLEDAV-GRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSH 116
Query: 387 IIPMRISGS---ENAPGSTHHRTLAGHHHLRLE----TNG 485
IIP R+ + E G H TL L L TNG
Sbjct: 117 IIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNG 156
Score = 41.6 bits (96), Expect = 0.006
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Frame = +2
Query: 44 IYGGT--TIFYTSLLLFSIFSISSQSSQIPGSGPGSNQTPTPSW*HFWHSHSTELAAARR 217
IYG + TIF++ L + ++ S I GSG ++ + + S TELA
Sbjct: 5 IYGCSVITIFFSFFFLLNASALESGHHNITGSGQINSNSVLVA---LLDSRYTELAELVE 61
Query: 218 ESNASSNLQQQTVGSLHITIFAPKNEALAAETRP*FQ--ALPPRTQKPSLSPDTSQ-VPH 388
++ L + VG +ITIFAP+NEAL + P F+ L P K + S +P
Sbjct: 62 KALLLQTL-EDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHIIPK 120
Query: 389 HPHENQWIRKRS 424
NQW + S
Sbjct: 121 RVGSNQWPEENS 132
Score = 21.2 bits (43), Expect(2) = 8e-11
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 151 NSNSILVALL 180
NSNS+LVALL
Sbjct: 40 NSNSVLVALL 49
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,954,804
Number of Sequences: 1393205
Number of extensions: 13640597
Number of successful extensions: 65005
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 51765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61569
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
