Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013556A_C01 KMC013556A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173737.1| conserved hypothetical protein; protein id: At1... 83 2e-15
pir||F86366 protein F26F24.8 [imported] - Arabidopsis thaliana g... 83 2e-15
ref|XP_204197.2| homolog of human MLLT2 unidentified gene [Mus m... 36 0.36
sp|O88573|AF4_MOUSE AF-4 protein (Proto-oncogene AF4) gi|1136034... 36 0.36
ref|XP_223161.1| similar to AF4 protein - mouse (fragment) [Ratt... 34 1.0
>ref|NP_173737.1| conserved hypothetical protein; protein id: At1g23230.1 [Arabidopsis
thaliana]
Length = 1615
Score = 83.2 bits (204), Expect = 2e-15
Identities = 56/121 (46%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Frame = -1
Query: 556 RIVFRIMVQVLPGLRDAHARFY*TLSSLLSILVDVFGLDSLTSDCC*CI*NSGSH*LPPS 377
R+VFRIM +LP L H F TL LLS LVDVFG + T+ + S L
Sbjct: 1490 RVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAP---VEASQIADLIDF 1546
Query: 376 CHSL*----RAGRVCTGYAANPRADVLALMGRASERLRPDIQHLLSHLNPDVNSSVYAAF 209
H + + G V T ++ PR D+LAL+GRA+E LRPD+QHLL+HL + NSS+YAA
Sbjct: 1547 LHHIIHYEGQGGAVQT--SSKPRPDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYAAA 1604
Query: 208 H 206
H
Sbjct: 1605 H 1605
Score = 53.5 bits (127), Expect = 2e-06
Identities = 23/29 (79%), Positives = 27/29 (92%)
Frame = -2
Query: 420 VDASEIADLIDFLHHAIHYEGQGGSVQAT 334
V+AS+IADLIDFLHH IHYEGQGG+VQ +
Sbjct: 1535 VEASQIADLIDFLHHIIHYEGQGGAVQTS 1563
>pir||F86366 protein F26F24.8 [imported] - Arabidopsis thaliana
gi|9295691|gb|AAF86997.1|AC005292_6 F26F24.8 [Arabidopsis
thaliana]
Length = 1583
Score = 83.2 bits (204), Expect = 2e-15
Identities = 56/121 (46%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Frame = -1
Query: 556 RIVFRIMVQVLPGLRDAHARFY*TLSSLLSILVDVFGLDSLTSDCC*CI*NSGSH*LPPS 377
R+VFRIM +LP L H F TL LLS LVDVFG + T+ + S L
Sbjct: 1458 RVVFRIMGPLLPRLASTHTLFNKTLMLLLSALVDVFGKTAQTTAP---VEASQIADLIDF 1514
Query: 376 CHSL*----RAGRVCTGYAANPRADVLALMGRASERLRPDIQHLLSHLNPDVNSSVYAAF 209
H + + G V T ++ PR D+LAL+GRA+E LRPD+QHLL+HL + NSS+YAA
Sbjct: 1515 LHHIIHYEGQGGAVQT--SSKPRPDILALIGRAAETLRPDVQHLLAHLKTNPNSSIYAAA 1572
Query: 208 H 206
H
Sbjct: 1573 H 1573
Score = 53.5 bits (127), Expect = 2e-06
Identities = 23/29 (79%), Positives = 27/29 (92%)
Frame = -2
Query: 420 VDASEIADLIDFLHHAIHYEGQGGSVQAT 334
V+AS+IADLIDFLHH IHYEGQGG+VQ +
Sbjct: 1503 VEASQIADLIDFLHHIIHYEGQGGAVQTS 1531
>ref|XP_204197.2| homolog of human MLLT2 unidentified gene [Mus musculus]
Length = 1226
Score = 35.8 bits (81), Expect = 0.36
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +1
Query: 154 IGSEHTLATKMDSGPTSDEMPHKQKNSHQDSSERADVECLDVISLMPFP*EP-KHRLEGW 330
+ S H+ + + +S + + ++S DS E + E L+ + P P K +L+ W
Sbjct: 454 VASAHSSSGESESSESDSSSDSESESSSSDSEEEEENEPLETRAPEPEPPTTNKWQLDNW 513
Query: 331 LRSLYRPSLPFIVNGMMEEVNEIRYFRCINSNRRSGSPNQIHP 459
L + +PS+P G E +R + GS +Q HP
Sbjct: 514 LTKVNQPSVPLDGRGSTESPQ----WRQESKGVAEGSSDQQHP 552
>sp|O88573|AF4_MOUSE AF-4 protein (Proto-oncogene AF4) gi|11360348|pir||T42625 AF-4
protein - mouse gi|3328190|gb|AAD08668.1| proto-oncogene
AF4 [Mus musculus]
Length = 1217
Score = 35.8 bits (81), Expect = 0.36
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +1
Query: 154 IGSEHTLATKMDSGPTSDEMPHKQKNSHQDSSERADVECLDVISLMPFP*EP-KHRLEGW 330
+ S H+ + + +S + + ++S DS E + E L+ + P P K +L+ W
Sbjct: 446 VASAHSSSGESESSESDSSSDSESESSSSDSEEEEENEPLETRAPEPEPPTTNKWQLDNW 505
Query: 331 LRSLYRPSLPFIVNGMMEEVNEIRYFRCINSNRRSGSPNQIHP 459
L + +PS+P G E +R + GS +Q HP
Sbjct: 506 LTKVNQPSVPLDGRGSTESPQ----WRQESKGVAEGSSDQQHP 544
>ref|XP_223161.1| similar to AF4 protein - mouse (fragment) [Rattus norvegicus]
Length = 661
Score = 34.3 bits (77), Expect = 1.0
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Frame = +1
Query: 154 IGSEHTLATKMDSGPTSDEMPHKQKNSHQDSSERADVECLDVISLMPFP*EP---KHRLE 324
+ S H+ + + +S + + ++S DS E +E + P P P K +L+
Sbjct: 126 VASAHSSSAESESSESDSSSDSESESSSSDSEENEPLE-----TQAPEPEPPTTNKWQLD 180
Query: 325 GWLRSLYRPSLPFIVNGMMEEVNEIRYFRCINSNR--RSGSPNQIHP 459
WL + +PS+P G E RC ++ GS +Q HP
Sbjct: 181 NWLTKVNQPSVPLESRGSTESP------RCRQESKGGGEGSSDQQHP 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,347,308
Number of Sequences: 1393205
Number of extensions: 9864957
Number of successful extensions: 25240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 24715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25228
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
