Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013555A_C01 KMC013555A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG21908.1|AC026815_12 putative CER1 [Oryza sativa] 151 7e-36
gb|AAB87721.1| maize gl1 homolog [Arabidopsis thaliana] 142 4e-33
ref|NP_181306.1| CER1-like protein; protein id: At2g37700.1 [Ara... 135 3e-31
gb|AAC24373.1| CER1-like protein [Arabidopsis thaliana] 135 4e-31
dbj|BAA11025.1| The CER1-like 3' gene fragment shows homology to... 135 4e-31
>gb|AAG21908.1|AC026815_12 putative CER1 [Oryza sativa]
Length = 621
Score = 151 bits (381), Expect = 7e-36
Identities = 68/106 (64%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Frame = -2
Query: 603 VGDQLNEAERQKAAHGSVFIPFSQFPPKKLRKD-CFYLSTPAMVTPPSLVNVHSCENWLP 427
+GD L+ AE+ +A G++FIP+SQFPPK +RKD C Y +TPAM P +L NVHSCENWLP
Sbjct: 513 IGDGLDSAEQFRAQKGTLFIPYSQFPPKMVRKDSCSYSTTPAMAVPKTLQNVHSCENWLP 572
Query: 426 RRVMSAWRIAGILHALEDWNINECGDVMFSIEKVWQASLYHGFRPL 289
RRVMSAWRIAGILHALE WN +ECGD + ++KVW A++ HGF P+
Sbjct: 573 RRVMSAWRIAGILHALEGWNEHECGDKVLDMDKVWSAAIMHGFCPV 618
>gb|AAB87721.1| maize gl1 homolog [Arabidopsis thaliana]
Length = 625
Score = 142 bits (357), Expect = 4e-33
Identities = 64/107 (59%), Positives = 82/107 (75%), Gaps = 2/107 (1%)
Frame = -2
Query: 603 VGDQLNEAERQKAAHGSVFIPFSQFPPKKLRKDCFYLSTPAMVTPPSLVNVHSCENWLPR 424
VG+ E++KA G++FIPFSQFP K+LR DC Y +TPA++ P SLVNVHSCENWLPR
Sbjct: 514 VGEGTTREEQEKATKGTLFIPFSQFPLKQLRSDCIYHTTPALIVPKSLVNVHSCENWLPR 573
Query: 423 RVMSAWRIAGILHALEDWNINECGD--VMFSIEKVWQASLYHGFRPL 289
+ MSA R+AGILHALE W +ECG ++ ++KVW+A L HGF+PL
Sbjct: 574 KAMSATRVAGILHALEGWETHECGTSLLLSDLDKVWEACLSHGFQPL 620
>ref|NP_181306.1| CER1-like protein; protein id: At2g37700.1 [Arabidopsis thaliana]
gi|7485434|pir||T02536 CER1-like protein [imported] -
Arabidopsis thaliana gi|3236252|gb|AAC23640.1| CER1-like
protein [Arabidopsis thaliana]
Length = 635
Score = 135 bits (341), Expect = 3e-31
Identities = 62/108 (57%), Positives = 82/108 (75%), Gaps = 3/108 (2%)
Frame = -2
Query: 603 VGDQLNEAERQKAAHGSVFIPFSQFPPKKLRKDCFYLSTPAMVTPPSLVNVHSCENWLPR 424
VGD L+ E++ A G++F+PFSQFPPK LRKDCFY +TPAM+ P S N+ SCENWL R
Sbjct: 521 VGDGLSTKEQKMAKDGTLFLPFSQFPPKTLRKDCFYHTTPAMIIPHSAQNIDSCENWLGR 580
Query: 423 RVMSAWRIAGILHALEDWNINECG---DVMFSIEKVWQASLYHGFRPL 289
RVMSAWR+ GI+HALE W +ECG + + + +VW+A+L +GF+PL
Sbjct: 581 RVMSAWRVGGIVHALEGWKEHECGLDDNSIINPPRVWEAALRNGFQPL 628
>gb|AAC24373.1| CER1-like protein [Arabidopsis thaliana]
Length = 604
Score = 135 bits (340), Expect = 4e-31
Identities = 60/107 (56%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Frame = -2
Query: 603 VGDQLNEAERQKAAHGSVFIPFSQFPPKKLRKDCFYLSTPAMVTPPSLVNVHSCENWLPR 424
VGD + E+ KA G++F+PFS FPP KLRKDCFY STPAM P S N+ SCENWL R
Sbjct: 493 VGDGIENEEQMKAKEGTLFVPFSHFPPNKLRKDCFYQSTPAMRVPKSAQNIDSCENWLGR 552
Query: 423 RVMSAWRIAGILHALEDWNINECGDV--MFSIEKVWQASLYHGFRPL 289
RVMSAW+I GI+HALE W ++CG+ + + +W+A+L H F+PL
Sbjct: 553 RVMSAWKIGGIVHALEGWEEHDCGNTCNVLRLHAIWEAALRHDFQPL 599
>dbj|BAA11025.1| The CER1-like 3' gene fragment shows homology to the CER1 gene from
Arabidopsis thaliana and is almost identical to the part
of EST ATTS1001 (acc.nr. Z25487), which is transcribed
in flowers. The stopcodon of the CER1-like gene is
positioned at 1.0kb 5' of the CER1 startcodon
Length = 148
Score = 135 bits (340), Expect = 4e-31
Identities = 60/107 (56%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Frame = -2
Query: 603 VGDQLNEAERQKAAHGSVFIPFSQFPPKKLRKDCFYLSTPAMVTPPSLVNVHSCENWLPR 424
VGD + E+ KA G++F+PFS FPP KLRKDCFY STPAM P S N+ SCENWL R
Sbjct: 37 VGDGIENEEQMKAKEGTLFVPFSHFPPNKLRKDCFYQSTPAMRVPKSAQNIDSCENWLGR 96
Query: 423 RVMSAWRIAGILHALEDWNINECGDV--MFSIEKVWQASLYHGFRPL 289
RVMSAW+I GI+HALE W ++CG+ + + +W+A+L H F+PL
Sbjct: 97 RVMSAWKIGGIVHALEGWEEHDCGNTCNVLRLHAIWEAALRHDFQPL 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,809,478
Number of Sequences: 1393205
Number of extensions: 10437964
Number of successful extensions: 20811
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20797
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
