Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013530A_C01 KMC013530A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23083.1| unknown protein [Oryza sativa (japonica cultivar-... 66 3e-10
ref|NP_199127.1| putative protein; protein id: At5g43130.1 [Arab... 62 5e-09
pir||A86402 protein T22C5.17 [imported] - Arabidopsis thaliana g... 38 0.092
ref|NP_174093.1| hypothetical protein; protein id: At1g27720.1 [... 38 0.092
gb|AAN75480.1| dentin matrix protein 1 [Centurio senex] 35 0.46
>gb|AAO23083.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 755
Score = 65.9 bits (159), Expect = 3e-10
Identities = 41/96 (42%), Positives = 56/96 (57%), Gaps = 9/96 (9%)
Frame = +1
Query: 247 GTQITSAMDPSIVKLLEDDEDETMHSRVDVEAFQAALNRDI--GGDASTSQLSGSDSVLS 420
G + AMDP ++KLL+DD DETMHS DVEAF AALNR++ G ASTS + S L
Sbjct: 73 GERRPPAMDP-LIKLLDDDVDETMHSGADVEAFTAALNREVEGSGGASTSAAASSSQPLD 131
Query: 421 -------QENNNTVSQSLPQWPTSSLDSQTDSQNQE 507
QE+N+ + + QW S + + +NQ+
Sbjct: 132 HGAGLVPQESNSMFTHNHEQWQGSVKNEIGNQENQQ 167
>ref|NP_199127.1| putative protein; protein id: At5g43130.1 [Arabidopsis thaliana]
gi|9757840|dbj|BAB08277.1|
gb|AAF24960.1~gene_id:MMG4.16~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 689
Score = 62.0 bits (149), Expect = 5e-09
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +1
Query: 268 MDPSIVKLLEDDEDETMHSRVDVEAFQAALNRDIGGDASTSQLSGSDSVLSQENNNTVSQ 447
MDPSI KLLE+DEDE+MHS DV+AFQAALNRDI D S +Q S S + Q+ ++ ++
Sbjct: 1 MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDI-EDRSHNQESESQYMKLQKMSSQQAR 59
Query: 448 SLPQWPTSSLDSQTDSQNQEPKSV 519
+ + P + ++ + N+ PK V
Sbjct: 60 GV-EPPVNPMN--VNPINRNPKQV 80
>pir||A86402 protein T22C5.17 [imported] - Arabidopsis thaliana
gi|6693034|gb|AAF24960.1|AC012375_23 T22C5.17
[Arabidopsis thaliana]
Length = 697
Score = 37.7 bits (86), Expect = 0.092
Identities = 20/35 (57%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = +1
Query: 268 MDPSIVKLLEDDED-ETMHSRVDVEAFQAALNRDI 369
MD SIVKLLE+DE+ ++ HS D++ FQ +L RDI
Sbjct: 1 MDLSIVKLLEEDEEVDSKHSEDDLQMFQDSLIRDI 35
>ref|NP_174093.1| hypothetical protein; protein id: At1g27720.1 [Arabidopsis
thaliana]
Length = 617
Score = 37.7 bits (86), Expect = 0.092
Identities = 20/35 (57%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = +1
Query: 268 MDPSIVKLLEDDED-ETMHSRVDVEAFQAALNRDI 369
MD SIVKLLE+DE+ ++ HS D++ FQ +L RDI
Sbjct: 1 MDLSIVKLLEEDEEVDSKHSEDDLQMFQDSLIRDI 35
>gb|AAN75480.1| dentin matrix protein 1 [Centurio senex]
Length = 349
Score = 35.4 bits (80), Expect = 0.46
Identities = 21/85 (24%), Positives = 43/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 295 EDDEDETMHSRVDVEAFQAALNRDIGGDASTSQLS--GSDSVLSQENNNTVSQSLPQWPT 468
++D D + + + + +R+ D+ +++ +S S E+ N+ SQ Q P+
Sbjct: 262 QEDSDTSEEESLSKSSSSESKSREEQADSESNESLKYSEESSESTEDENSSSQEGLQSPS 321
Query: 469 SSLDSQTDSQNQEPKSVVQEEQASE 543
+S +SQ+D EP S +E+ S+
Sbjct: 322 ASSESQSDESQSEPDSQSEEDDGSD 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,980,476
Number of Sequences: 1393205
Number of extensions: 9510483
Number of successful extensions: 27768
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 26560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27705
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
