Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013524A_C01 KMC013524A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87320.1| unknown protein [Arabidopsis thaliana] 68 1e-10
ref|NP_190763.1| putative protein; protein id: At3g51950.1, supp... 68 1e-10
gb|AAM66020.1| unknown [Arabidopsis thaliana] 68 1e-10
ref|NP_191904.1| putative protein; protein id: At3g63450.1 [Arab... 65 6e-10
dbj|BAC43691.1| unknown protein [Arabidopsis thaliana] gi|273118... 40 0.029
>gb|AAL87320.1| unknown protein [Arabidopsis thaliana]
Length = 540
Score = 67.8 bits (164), Expect = 1e-10
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +2
Query: 464 MDSYEATRIVFSRIQNLDPENAGKIMGVLLLQDHGEK 574
MD YEATRIV SRIQ+LDPENA KIMG+LLLQDHGEK
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEK 37
>ref|NP_190763.1| putative protein; protein id: At3g51950.1, supported by cDNA:
7104., supported by cDNA: gi_19423978 [Arabidopsis
thaliana] gi|11357779|pir||T49074 hypothetical protein
F4F15.60 - Arabidopsis thaliana
gi|4678924|emb|CAB41315.1| putative protein [Arabidopsis
thaliana] gi|23297746|gb|AAN13016.1| unknown protein
[Arabidopsis thaliana]
Length = 540
Score = 67.8 bits (164), Expect = 1e-10
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +2
Query: 464 MDSYEATRIVFSRIQNLDPENAGKIMGVLLLQDHGEK 574
MD YEATRIV SRIQ+LDPENA KIMG+LLLQDHGEK
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEK 37
>gb|AAM66020.1| unknown [Arabidopsis thaliana]
Length = 540
Score = 67.8 bits (164), Expect = 1e-10
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +2
Query: 464 MDSYEATRIVFSRIQNLDPENAGKIMGVLLLQDHGEK 574
MD YEATRIV SRIQ+LDPENA KIMG+LLLQDHGEK
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEK 37
>ref|NP_191904.1| putative protein; protein id: At3g63450.1 [Arabidopsis thaliana]
gi|11357942|pir||T49186 hypothetical protein MAA21.80 -
Arabidopsis thaliana gi|7573328|emb|CAB87798.1| putative
protein [Arabidopsis thaliana]
Length = 399
Score = 65.1 bits (157), Expect = 6e-10
Identities = 31/37 (83%), Positives = 33/37 (88%)
Frame = +2
Query: 464 MDSYEATRIVFSRIQNLDPENAGKIMGVLLLQDHGEK 574
MD YEATRIV SRIQNLDP NA KI+G+LLLQDHGEK
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEK 37
>dbj|BAC43691.1| unknown protein [Arabidopsis thaliana] gi|27311807|gb|AAO00869.1|
putative protein [Arabidopsis thaliana]
Length = 650
Score = 39.7 bits (91), Expect = 0.029
Identities = 17/37 (45%), Positives = 29/37 (77%)
Frame = +2
Query: 464 MDSYEATRIVFSRIQNLDPENAGKIMGVLLLQDHGEK 574
MDS +AT ++ ++I++L+P+ A KI+G LLL D G++
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDR 37
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,605,867
Number of Sequences: 1393205
Number of extensions: 10849312
Number of successful extensions: 29084
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28198
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
