Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013510A_C01 KMC013510A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194735.2| putative protein; protein id: At4g30060.1, supp... 73 3e-12
dbj|BAC43211.1| unknown protein [Arabidopsis thaliana] gi|273117... 71 1e-11
ref|NP_179506.2| unknown protein; protein id: At2g19160.1, suppo... 69 5e-11
ref|NP_194317.1| putative protein; protein id: At4g25870.1 [Arab... 64 2e-09
ref|NP_200537.2| putative protein; protein id: At5g57270.1, supp... 53 2e-06
>ref|NP_194735.2| putative protein; protein id: At4g30060.1, supported by cDNA:
gi_17065049 [Arabidopsis thaliana]
gi|17065050|gb|AAL32679.1| putative protein [Arabidopsis
thaliana] gi|21387127|gb|AAM47967.1| putative protein
[Arabidopsis thaliana]
Length = 401
Score = 72.8 bits (177), Expect = 3e-12
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = -3
Query: 561 LRSKDEVPHITSEAQRSVIITPCMWNGSKRPCYLFARKFYPETLDKLMHLFSN 403
L S D + H+TS I PCMWNG +RPCYLF RKF+P+TLDKL+ LFSN
Sbjct: 340 LTSTDTLVHVTSVGMGEEIWMPCMWNGIQRPCYLFGRKFHPDTLDKLLDLFSN 392
>dbj|BAC43211.1| unknown protein [Arabidopsis thaliana] gi|27311797|gb|AAO00864.1|
Unknown protein [Arabidopsis thaliana]
Length = 376
Score = 70.9 bits (172), Expect = 1e-11
Identities = 28/50 (56%), Positives = 39/50 (78%)
Frame = -3
Query: 537 HITSEAQRSVIITPCMWNGSKRPCYLFARKFYPETLDKLMHLFSNSSVLL 388
H+TS+ ++ + PC+W G +RPCYLFARKF PETLD+LM+LF N + L+
Sbjct: 327 HVTSDLKKVTTVKPCLWKGEQRPCYLFARKFNPETLDRLMYLFPNYTSLV 376
>ref|NP_179506.2| unknown protein; protein id: At2g19160.1, supported by cDNA:
gi_17065505 [Arabidopsis thaliana]
gi|17065506|gb|AAL32907.1| Unknown protein [Arabidopsis
thaliana]
Length = 394
Score = 68.6 bits (166), Expect = 5e-11
Identities = 32/55 (58%), Positives = 37/55 (67%)
Frame = -3
Query: 567 QTLRSKDEVPHITSEAQRSVIITPCMWNGSKRPCYLFARKFYPETLDKLMHLFSN 403
+ + S D V +TSE V T CMWNG KRPCYLF RKF+ +TLDKLM LF N
Sbjct: 335 KNISSIDAVSRVTSEKNGVVSWTHCMWNGIKRPCYLFGRKFHADTLDKLMELFPN 389
>ref|NP_194317.1| putative protein; protein id: At4g25870.1 [Arabidopsis thaliana]
gi|7485482|pir||T04241 hypothetical protein F14M19.150 -
Arabidopsis thaliana gi|4539305|emb|CAB39608.1| putative
protein [Arabidopsis thaliana]
gi|7269438|emb|CAB79442.1| putative protein [Arabidopsis
thaliana]
Length = 389
Score = 63.5 bits (153), Expect = 2e-09
Identities = 29/56 (51%), Positives = 39/56 (68%), Gaps = 1/56 (1%)
Frame = -3
Query: 567 QTLRSKDEVPHITSEAQRS-VIITPCMWNGSKRPCYLFARKFYPETLDKLMHLFSN 403
+ + S+D H+TS + + PC WNG KRPCYLFARKF+P+TLD L++LF N
Sbjct: 328 KNVTSEDMSVHVTSVGKHGDELHWPCTWNGIKRPCYLFARKFHPDTLDTLVNLFPN 383
>ref|NP_200537.2| putative protein; protein id: At5g57270.1, supported by cDNA:
gi_17065015, supported by cDNA: gi_17065151, supported
by cDNA: gi_20260013 [Arabidopsis thaliana]
gi|17065152|gb|AAL32730.1| Unknown protein [Arabidopsis
thaliana]
Length = 388
Score = 53.1 bits (126), Expect = 2e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -3
Query: 567 QTLRSKDEVPHITSEAQRSVIIT-PCMWNGSKRPCYLFARKFYPETLDKLMHLFSN 403
+ + S D H+TS +R + PC W G +RPCYLFARK + + L KL+ LF N
Sbjct: 327 KNITSDDMSVHVTSVGKRGEELRWPCTWKGIRRPCYLFARKLHSDALYKLVRLFPN 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,965,857
Number of Sequences: 1393205
Number of extensions: 9486455
Number of successful extensions: 18873
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18872
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
