Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013509A_C01 KMC013509A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67433.1|AF458407_1 anther-specific proline-rich protein [B... 41 0.011
sp|Q05544|N551_SOYBN EARLY NODULIN 55-1 PRECURSOR (N-55-1) gi|48... 41 0.011
sp|P93329|NO20_MEDTR EARLY NODULIN 20 PRECURSOR (N-20) gi|177135... 38 0.023
ref|ZP_00124811.1| hypothetical protein [Pseudomonas syringae pv... 39 0.033
ref|ZP_00033659.1| hypothetical protein [Burkholderia fungorum] 35 0.48
>gb|AAL67433.1|AF458407_1 anther-specific proline-rich protein [Brassica oleracea]
Length = 525
Score = 40.8 bits (94), Expect = 0.011
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 82 PSPPSPSPSPSPSPTGPLRPQPLLLSS*PTRFLAVD--FNNTNHNQVSTRLQ 231
PSPP+PSP P PSP PL P+P + P F D F+ N+N + ++++
Sbjct: 174 PSPPAPSPKPKPSPPAPLPPKP-ENKTIPAVFFFGDSIFDTGNNNNLKSKIK 224
Score = 32.0 bits (71), Expect = 5.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 82 PSPPSPSPSPSPSPTGPLRPQPL 150
P P+PSP P PSP P P P+
Sbjct: 139 PPAPAPSPKPGPSPPPPKPPSPV 161
Score = 32.0 bits (71), Expect = 5.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 82 PSPPSPSPSPSPSPTGPLRPQP 147
P PP P+P+PSP P P +PQP
Sbjct: 116 PKPP-PAPAPSPCPPQPPKPQP 136
Score = 31.6 bits (70), Expect = 6.9
Identities = 15/47 (31%), Positives = 21/47 (43%)
Frame = +1
Query: 7 PPLTKTTKPRIVHESV*KRCARIYTPSPPSPSPSPSPSPTGPLRPQP 147
PP+ +P+ C I P P P+P+PSP P P+P
Sbjct: 88 PPIPPKPQPKPPPAPGPSACPPIPPKPQPKPPPAPAPSPCPPQPPKP 134
>sp|Q05544|N551_SOYBN EARLY NODULIN 55-1 PRECURSOR (N-55-1) gi|487040|pir||S37353 nodulin
(clone GmENOD55-1) - soybean (fragment)
gi|18585|emb|CAA48908.1| nodulin [Glycine max]
Length = 137
Score = 40.8 bits (94), Expect = 0.011
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 73 IYTPSPPSPSPSPSPSPTGPLRPQPLLLSS*PT 171
I++PSP SPSPSPSPSP+ P P L S P+
Sbjct: 75 IHSPSPSSPSPSPSPSPSPSPSPSPSLSSPSPS 107
>sp|P93329|NO20_MEDTR EARLY NODULIN 20 PRECURSOR (N-20) gi|1771351|emb|CAA67830.1| ENOD20
[Medicago truncatula]
Length = 268
Score = 37.7 bits (86), Expect(2) = 0.023
Identities = 22/47 (46%), Positives = 27/47 (56%)
Frame = +1
Query: 4 SPPLTKTTKPRIVHESV*KRCARIYTPSPPSPSPSPSPSPTGPLRPQ 144
SPP +++ P I H R PSPPSPSPSPSPSP+ P+
Sbjct: 141 SPPTPRSSTP-IPHPP------RRSLPSPPSPSPSPSPSPSPSPSPR 180
Score = 33.5 bits (75), Expect = 1.8
Identities = 16/24 (66%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 79 TPSP-PSPSPSPSPSPTGPLRPQP 147
+PSP PSPSPSPSPSP P P
Sbjct: 164 SPSPSPSPSPSPSPSPRSTPIPHP 187
Score = 21.2 bits (43), Expect(2) = 0.023
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 161 PDPPDFSPSISTTPTIIKSP 220
P P SPS+S +P+ +SP
Sbjct: 192 PASPSPSPSLSKSPSPSESP 211
>ref|ZP_00124811.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 274
Score = 39.3 bits (90), Expect = 0.033
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 7 PPLTKTTKPRIVHESV*KRCARIYTPSPPSPSPSPSPSPTGPLRPQP 147
PP KP++ K+ + P+PP+P+P+ +PSP P P P
Sbjct: 121 PPPKPVEKPKVEKPKPVKKVEPVKKPTPPAPTPAAAPSPPAPPTPAP 167
>ref|ZP_00033659.1| hypothetical protein [Burkholderia fungorum]
Length = 610
Score = 35.4 bits (80), Expect = 0.48
Identities = 17/24 (70%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
Frame = +1
Query: 79 TPSP-PSPSPSPSPSPTGPLRPQP 147
+PSP PSPSPSPSPSPT P P
Sbjct: 193 SPSPSPSPSPSPSPSPTPTPSPTP 216
Score = 35.4 bits (80), Expect = 0.48
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 1 TSPPLTKTTKPRIVHESV*KRCARIYTPSP-PSPSPSPSPSPTGPLRPQP 147
+SP T T+ P V + +PSP PSPSPSPSPSP+ P P
Sbjct: 162 SSPAATATSSPAATPSPV-PSPSPAPSPSPSPSPSPSPSPSPSPSPSPTP 210
Score = 34.3 bits (77), Expect = 1.1
Identities = 16/24 (66%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
Frame = +1
Query: 79 TPSP-PSPSPSPSPSPTGPLRPQP 147
+PSP PSPSPSPSP+PT P P
Sbjct: 195 SPSPSPSPSPSPSPTPTPSPTPAP 218
Score = 33.1 bits (74), Expect = 2.4
Identities = 15/24 (62%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
Frame = +1
Query: 79 TPSP-PSPSPSPSPSPTGPLRPQP 147
+PSP PSPSP+P+PSPT P P
Sbjct: 199 SPSPSPSPSPTPTPSPTPAPTPTP 222
Score = 32.3 bits (72), Expect = 4.0
Identities = 14/24 (58%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
Frame = +1
Query: 79 TPSP-PSPSPSPSPSPTGPLRPQP 147
TPSP P+P+P+PSP+PT P P
Sbjct: 211 TPSPTPAPTPTPSPTPTPTPTPTP 234
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,343,600
Number of Sequences: 1393205
Number of extensions: 12968254
Number of successful extensions: 140817
Number of sequences better than 10.0: 534
Number of HSP's better than 10.0 without gapping: 68800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118303
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
