Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013508A_C01 KMC013508A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191240.1| hypothetical protein; protein id: At3g56810.1 [... 47 1e-04
ref|NP_700998.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.3
gb|EAA28022.1| hypothetical protein [Neurospora crassa] 32 3.3
gb|AAF35398.1|AC004145_4 L5801.5 [Leishmania major] gi|21629338|... 31 5.6
ref|NP_704212.1| hypothetical protein [Plasmodium falciparum 3D7... 31 7.3
>ref|NP_191240.1| hypothetical protein; protein id: At3g56810.1 [Arabidopsis
thaliana] gi|11346173|pir||T51269 hypothetical protein
T8M16_140 - Arabidopsis thaliana
gi|9663000|emb|CAC00744.1| hypothetical protein
[Arabidopsis thaliana]
Length = 332
Score = 47.0 bits (110), Expect = 1e-04
Identities = 21/37 (56%), Positives = 30/37 (80%)
Frame = -3
Query: 377 QGMIKSVEEVCRDVAWGEKREVGRIGLALQDYIYRDL 267
+ +++SV +VC DVA G++REV +IGLAL D+I RDL
Sbjct: 239 RSLMESVNQVCDDVASGQRREVAKIGLALHDHICRDL 275
>ref|NP_700998.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496060|gb|AAN35722.1|AE014837_64 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 5922
Score = 32.0 bits (71), Expect = 3.3
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Frame = +3
Query: 78 IKCNLQANISLIEIYNRFREEKKENRIILTMNIV*KQSLLLHASNGKVGKVYKHPKSLTI 257
I N+ NI E++N ++ EKK + I MNI K S + + + + K + + +
Sbjct: 1749 ILTNIMLNILAYELHNIYKIEKKLHSIFSLMNI--KNSDINNKIHININKKLNRKQKIAL 1806
Query: 258 ----SSIKIPVDIILQSQPYSSNLSLFS-PSNIPAHFLYTFYHALVAPHY*TIFIKVG 416
S++ I + IL SQ + N+ FS N + +Y+F P I +K G
Sbjct: 1807 FYYSSNVLIHIIEIL-SQYFKKNILYFSEKKNETIYEIYSFVIQKAKPEEKIIILKEG 1863
>gb|EAA28022.1| hypothetical protein [Neurospora crassa]
Length = 1643
Score = 32.0 bits (71), Expect = 3.3
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 350 LPLHFLSCLGSSTLLNDLHQGWLSCLSTRLSVSRR 454
LP+ F GS+TLL + ++G ++C+ ++ S +RR
Sbjct: 846 LPIVFPETAGSNTLLREWYKGTINCIMSQASTTRR 880
>gb|AAF35398.1|AC004145_4 L5801.5 [Leishmania major] gi|21629338|gb|AAM69015.1|AC125735_45
L5801.5 [Leishmania major]
Length = 1060
Score = 31.2 bits (69), Expect = 5.6
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 256 IVRDLGCLYTLPTLPFEACKRRLCF*T-IFMVKIILFSFFSSLN 128
I+R+LGC+Y +P RR+ + T + ++LF++FS +N
Sbjct: 844 ILRNLGCIYAIPDFISMVIVRRMRWSTWVHHACVVLFNYFSIMN 887
>ref|NP_704212.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498950|emb|CAD51028.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2162
Score = 30.8 bits (68), Expect = 7.3
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +3
Query: 207 SNGKVGKVYKHPKSLTISSIKIPVDIILQSQPYSSNLSLFSPSNI 341
+N + K+YKH ++I P I+ + PYS N LF N+
Sbjct: 1025 NNYALHKLYKHYNKNVCTNINYPSSILYNNHPYSYNNYLFCIKNL 1069
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,580,120
Number of Sequences: 1393205
Number of extensions: 7806788
Number of successful extensions: 22944
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22938
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
