Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013502A_C01 KMC013502A_c01
(403 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700510.1| N-acetyltransferase, putative [Plasmodium falci... 33 0.85
ref|NP_786299.1| nitroreductase [Lactobacillus plantarum WCFS1] ... 31 4.2
sp|P12650|VGL2_IBVK E2 glycoprotein precursor (Spike glycoprotei... 31 4.2
ref|NP_648378.1| CG11989-PA [Drosophila melanogaster] gi|2466208... 30 5.5
ref|NP_502703.1| Putative nuclear protein of bilaterial origin [... 30 5.5
>ref|NP_700510.1| N-acetyltransferase, putative [Plasmodium falciparum 3D7]
gi|23494899|gb|AAN35234.1|AE014829_34
N-acetyltransferase, putative [Plasmodium falciparum
3D7]
Length = 152
Score = 33.1 bits (74), Expect = 0.85
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +1
Query: 196 LTSIQHINNFRLVQNSTQKCFFFHAFHHPYMKMIAVD 306
L S+Q N+ L +N + +F+HA PY+ IA D
Sbjct: 12 LLSMQQCNSINLPENYNLRYYFYHALSWPYLSQIAED 48
>ref|NP_786299.1| nitroreductase [Lactobacillus plantarum WCFS1]
gi|28272246|emb|CAD65155.1| nitroreductase
[Lactobacillus plantarum WCFS1]
Length = 217
Score = 30.8 bits (68), Expect = 4.2
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
Frame = -1
Query: 301 LQSFSYM-----DGGKREKKSIFEWNFAPAESCLCVGLM*GTRQTHRGQRQQWN*VCD 143
LQS+ ++ DG + K + +N+ +SC + + G Q+H R WN C+
Sbjct: 54 LQSWHFVVADSADGKAKAKSVLMPFNYPQIDSCSAMIFVLGDTQSHLVYRDVWNKACE 111
>sp|P12650|VGL2_IBVK E2 glycoprotein precursor (Spike glycoprotein) (Peplomer protein)
[Contains: Spike protein S1; Spike protein S2]
gi|74848|pir||VGIHAK E2 glycoprotein precursor - avian
infectious bronchitis virus (strain KB8523)
gi|331187|gb|AAA66578.1| spike protein
Length = 1162
Score = 30.8 bits (68), Expect = 4.2
Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 2/72 (2%)
Frame = -1
Query: 214 CVGLM*GTRQTHRGQRQQWN*VCD*RPFVIHSIGYKDKLELM--YVSFNSSHVLSYALSN 41
C+ + G R QQ+ VCD V++S+G K+ +EL+ Y S + + LSN
Sbjct: 610 CLQYICGNSLECRNLFQQYGPVCDNMLSVVNSVGQKEDMELLNFYSSTKPAGFNTPVLSN 669
Query: 40 T*SPESNPTTFI 5
+ E N + F+
Sbjct: 670 VSTGEFNISLFL 681
>ref|NP_648378.1| CG11989-PA [Drosophila melanogaster] gi|24662085|ref|NP_729581.1|
CG11989-PB [Drosophila melanogaster]
gi|24662089|ref|NP_729582.1| CG11989-PC [Drosophila
melanogaster] gi|24662093|ref|NP_729583.1| CG11989-PD
[Drosophila melanogaster] gi|24662097|ref|NP_729584.1|
CG11989-PE [Drosophila melanogaster]
gi|7294847|gb|AAF50178.1| CG11989-PA [Drosophila
melanogaster] gi|16769216|gb|AAL28827.1| LD19812p
[Drosophila melanogaster] gi|23093763|gb|AAN11941.1|
CG11989-PB [Drosophila melanogaster]
gi|23093764|gb|AAN11942.1| CG11989-PC [Drosophila
melanogaster] gi|23093765|gb|AAN11943.1| CG11989-PD
[Drosophila melanogaster] gi|23093766|gb|AAN11944.1|
CG11989-PE [Drosophila melanogaster]
Length = 196
Score = 30.4 bits (67), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = +1
Query: 196 LTSIQHINNFRLVQNSTQKCFFFHAFHHPYMKMIAVD 306
L ++QH N L +N K +F+H P + +AVD
Sbjct: 11 LMTMQHCNLLCLPENYQMKYYFYHGLTWPQLSYVAVD 47
>ref|NP_502703.1| Putative nuclear protein of bilaterial origin [Caenorhabditis
elegans] gi|7503911|pir||T22487 hypothetical protein
F52B11.7 - Caenorhabditis elegans
gi|3877427|emb|CAB05200.1| Hypothetical protein F52B11.7
[Caenorhabditis elegans]
Length = 214
Score = 30.4 bits (67), Expect = 5.5
Identities = 21/64 (32%), Positives = 31/64 (47%)
Frame = +1
Query: 82 THTLVPTYLYNLWSGSQRAFNHKPSSTAASALYVSVSYLTSIQHINNFRLVQNSTQKCFF 261
T L P L G+Q++ N SSTA+S ++ + L H+ F + + KCFF
Sbjct: 116 TRNLPPVLLVR---GNQQSVNTSSSSTASSPHHLIIPALAINPHLKVF--PSHISLKCFF 170
Query: 262 FHAF 273
F F
Sbjct: 171 FFRF 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,072,409
Number of Sequences: 1393205
Number of extensions: 7226151
Number of successful extensions: 15763
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15759
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
