Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013501A_C01 KMC013501A_c01
(814 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00116847.1| hypothetical protein [Cytophaga hutchinsonii] 35 1.3
ref|NP_758009.1| hypothetical protein [Mycoplasma penetrans] gi|... 35 1.7
ref|NP_705242.1| hypothetical protein [Plasmodium falciparum 3D7... 34 2.9
ref|NP_704457.1| hypothetical protein [Plasmodium falciparum 3D7... 33 6.5
gb|EAA20741.1| hypothetical protein [Plasmodium yoelii yoelii] 32 8.5
>ref|ZP_00116847.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 292
Score = 35.0 bits (79), Expect = 1.3
Identities = 32/102 (31%), Positives = 51/102 (49%), Gaps = 2/102 (1%)
Frame = -1
Query: 442 AYIQLFFSLFCCKFHITLVFKS--VVDIIESLMFRFVHSI*KVLGLFFVGKTL*FI*TNA 269
AY+Q+F SLF K + L+F + V+DI F+++ S K+ G F+ + F+
Sbjct: 115 AYVQVFASLFPGKIN-KLIFSNCEVLDIFPPSKFKYLTSAVKIPGFNFILSRV-FMFKKI 172
Query: 268 LE*FLCMVLGVF*QSINLNCDPGRSLRLYHWFMHNLVQVPRL 143
L+ L M L S + D LYH ++HN +Q R+
Sbjct: 173 LKSELIMGL----LSFKITTD-----ELYHLYLHNFIQDKRI 205
>ref|NP_758009.1| hypothetical protein [Mycoplasma penetrans]
gi|26454083|dbj|BAC44413.1| hypothetical protein
[Mycoplasma penetrans]
Length = 477
Score = 34.7 bits (78), Expect = 1.7
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Frame = +2
Query: 41 VNFKKINIQQRISIIQRELKIQIKSLIFEASRTKQSWNLYKVMHEPMIEA*RSSRITVQV 220
+NF +N +++IS + ++ E + K S+ K + E +
Sbjct: 88 INFHSLNEKRKIS----------EKILLEVGKEKSSF--LKSLSEDVS------------ 123
Query: 221 NGLSENSKHHAEELFQCICLYEL*RFS--NKK*TKDFLYTMYKPKHQGLNNVYYTFEDQS 394
N +S+NSK E+ F+C L L R S N K +L+ + PK N T+ D S
Sbjct: 124 NLISDNSKEIVEDFFKCFILTLLDRTSLKNLKEYVIYLFELDFPK----ENKLQTWTD-S 178
Query: 395 NMKFTTKQRKKKLYICLLN 451
N K + K+ K+KL + N
Sbjct: 179 NFKISRKKEKEKLQMIFKN 197
>ref|NP_705242.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615487|emb|CAD52478.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1328
Score = 33.9 bits (76), Expect = 2.9
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 200 SRITVQVNGLSENSKHHAEELFQCICLYEL*RFSNKK*TKDFLYTMYKPKHQGLNNVYYT 379
S +++QV ++ SK + L F +K ++L+ +Y K+ GL N+Y T
Sbjct: 276 SPVSLQVKQKNDTSKENVNHLIN---------FQVRKYILNYLFNIYYEKYIGLKNLYKT 326
Query: 380 FE--DQSNMKFTTKQRKKKLYICLLNPD 457
F+ +KF K+ ++ L N D
Sbjct: 327 FDLHKSYKLKFCRKENDTFKFVSLDNID 354
>ref|NP_704457.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499196|emb|CAD51276.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1259
Score = 32.7 bits (73), Expect = 6.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 121 NQTFYLYFQFPLNNAYTLLNINFLEIDIMH 32
N+ Y+YF+ NN Y LN+N ++D+++
Sbjct: 848 NEKDYIYFEADKNNKYNFLNVNINDVDLIY 877
>gb|EAA20741.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 403
Score = 32.3 bits (72), Expect = 8.5
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 320 DFLYTMYKPKHQGLNNVYYTF--EDQSNMKFTTKQRKKKLYICLLNPD 457
++++ MY K+ GL N+Y +F ++ +K +K+ +ICL N D
Sbjct: 64 NYIFNMYYEKYIGLKNLYKSFNLQESYKLKHCSKENSLFKFICLENID 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 674,733,866
Number of Sequences: 1393205
Number of extensions: 15242296
Number of successful extensions: 33902
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33900
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41736604858
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
