Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013499A_C01 KMC013499A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200601.2| putative protein; protein id: At5g57930.1, supp... 44 0.001
dbj|BAB08863.1| gb|AAD38255.1~gene_id:MTI20.19~similar to unknow... 44 0.001
ref|NP_188811.1| hypothetical protein; protein id: At3g21740.1 [... 44 0.002
dbj|BAB02836.1| gb|AAD38255.1~gene_id:MSD21.5~similar to unknown... 44 0.002
dbj|BAC42155.1| unknown protein [Arabidopsis thaliana] 44 0.002
>ref|NP_200601.2| putative protein; protein id: At5g57930.1, supported by cDNA:
gi_17065249 [Arabidopsis thaliana]
gi|17065250|gb|AAL32779.1| Unknown protein [Arabidopsis
thaliana] gi|21387175|gb|AAM47991.1| unknown protein
[Arabidopsis thaliana]
Length = 440
Score = 44.3 bits (103), Expect = 0.001
Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 574 RDFYGRVPAILDLCAKAGAIVPAEYNKMMK-EQGLP 470
R FYG+ PA++++CA+AGA+VP Y M+ E G+P
Sbjct: 395 RSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIP 430
>dbj|BAB08863.1| gb|AAD38255.1~gene_id:MTI20.19~similar to unknown protein
[Arabidopsis thaliana]
Length = 405
Score = 44.3 bits (103), Expect = 0.001
Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 574 RDFYGRVPAILDLCAKAGAIVPAEYNKMMK-EQGLP 470
R FYG+ PA++++CA+AGA+VP Y M+ E G+P
Sbjct: 360 RSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIP 395
>ref|NP_188811.1| hypothetical protein; protein id: At3g21740.1 [Arabidopsis
thaliana]
Length = 365
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/34 (55%), Positives = 23/34 (66%)
Frame = -1
Query: 574 RDFYGRVPAILDLCAKAGAIVPAEYNKMMKEQGL 473
R +YG PAI+ LC+ GAIVP +Y MK QGL
Sbjct: 319 RSYYGHAPAIVSLCSHTGAIVPVKYACKMKPQGL 352
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -1
Query: 565 YGRVPAILDLCAKAGAIVPAE 503
Y RVPAIL+LC +AGAI P E
Sbjct: 181 YDRVPAILELCCQAGAIHPEE 201
>dbj|BAB02836.1| gb|AAD38255.1~gene_id:MSD21.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 429
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/34 (55%), Positives = 23/34 (66%)
Frame = -1
Query: 574 RDFYGRVPAILDLCAKAGAIVPAEYNKMMKEQGL 473
R +YG PAI+ LC+ GAIVP +Y MK QGL
Sbjct: 383 RSYYGHAPAIVSLCSHTGAIVPVKYACKMKPQGL 416
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -1
Query: 565 YGRVPAILDLCAKAGAIVPAE 503
Y RVPAIL+LC +AGAI P E
Sbjct: 245 YDRVPAILELCCQAGAIHPEE 265
>dbj|BAC42155.1| unknown protein [Arabidopsis thaliana]
Length = 337
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/34 (55%), Positives = 23/34 (66%)
Frame = -1
Query: 574 RDFYGRVPAILDLCAKAGAIVPAEYNKMMKEQGL 473
R +YG PAI+ LC+ GAIVP +Y MK QGL
Sbjct: 291 RSYYGHAPAIVSLCSHTGAIVPVKYACKMKPQGL 324
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -1
Query: 565 YGRVPAILDLCAKAGAIVPAE 503
Y RVPAIL+LC +AGAI P E
Sbjct: 153 YDRVPAILELCCQAGAIHPEE 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,403,542
Number of Sequences: 1393205
Number of extensions: 10875622
Number of successful extensions: 25954
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 24208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25954
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
