Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013484A_C01 KMC013484A_c01
(676 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196216.1| putative protein; protein id: At5g05970.1 [Arab... 86 4e-16
dbj|BAB27048.1| unnamed protein product [Mus musculus] 45 7e-04
ref|NP_032708.1| neural precursor cell expressed, developmentall... 45 7e-04
ref|NP_690869.1| neural precursor cell expressed, developmentall... 45 7e-04
dbj|BAC33321.1| unnamed protein product [Mus musculus] 45 7e-04
>ref|NP_196216.1| putative protein; protein id: At5g05970.1 [Arabidopsis thaliana]
gi|10177570|dbj|BAB10802.1| contains similarity to
regulatory protein Nedd1~gene_id:K18J17.16 [Arabidopsis
thaliana]
Length = 787
Score = 86.3 bits (212), Expect = 4e-16
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = -3
Query: 674 SFQRSIHGDIRNLHVEVLRQFHLQETEMSTMMKSLLDNPAELMKEVKLLRKENPPLRQML 495
SFQ SIH D+RNLH+E+LRQFH+ E EMS ++ S+L+N AE MKE+KLLRKEN LRQ L
Sbjct: 728 SFQNSIHDDVRNLHIEILRQFHMHEMEMSKVLSSILENQAEQMKELKLLRKENQELRQRL 787
>dbj|BAB27048.1| unnamed protein product [Mus musculus]
Length = 660
Score = 45.4 bits (106), Expect = 7e-04
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = -3
Query: 671 FQRSIHGDIRNLHVEVLRQFHLQETEMSTMMKSLLDNPAELMKEVKLLRKENPPLR 504
F+ + H DI NL VE+++QFH+Q EM ++++ N L+ E++ LR+EN LR
Sbjct: 603 FREACHRDIVNLQVEMIKQFHIQLNEMHSLLERYSVNEG-LVAEIERLREENKRLR 657
>ref|NP_032708.1| neural precursor cell expressed, developmentally down-regulated
gene 1 [Mus musculus] gi|2137729|pir||I60167 regulatory
protein Nedd1 - mouse gi|286103|dbj|BAA01554.1| nedd-1
protein [Mus musculus]
Length = 660
Score = 45.4 bits (106), Expect = 7e-04
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = -3
Query: 671 FQRSIHGDIRNLHVEVLRQFHLQETEMSTMMKSLLDNPAELMKEVKLLRKENPPLR 504
F+ + H DI NL VE+++QFH+Q EM ++++ N L+ E++ LR+EN LR
Sbjct: 603 FREACHRDIVNLQVEMIKQFHIQLNEMHSLLERYSVNEG-LVAEIERLREENKRLR 657
>ref|NP_690869.1| neural precursor cell expressed, developmentally down-regulated 1
[Homo sapiens] gi|20379563|gb|AAH27605.1| Similar to
neural precursor cell expressed, developmentally
down-regulated gene 1 [Homo sapiens]
Length = 660
Score = 45.4 bits (106), Expect = 7e-04
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = -3
Query: 671 FQRSIHGDIRNLHVEVLRQFHLQETEMSTMMKSLLDNPAELMKEVKLLRKENPPLR 504
F+ + H DI NL VE+++QFH+Q EM ++++ N L+ E++ LR+EN LR
Sbjct: 603 FREACHRDIVNLQVEMIKQFHMQLNEMHSLLERYSVNEG-LVAEIERLREENKRLR 657
>dbj|BAC33321.1| unnamed protein product [Mus musculus]
Length = 660
Score = 45.4 bits (106), Expect = 7e-04
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = -3
Query: 671 FQRSIHGDIRNLHVEVLRQFHLQETEMSTMMKSLLDNPAELMKEVKLLRKENPPLR 504
F+ + H DI NL VE+++QFH+Q EM ++++ N L+ E++ LR+EN LR
Sbjct: 603 FREACHRDIVNLQVEMIKQFHIQLNEMHSLLERYSVNEG-LVAEIERLREENKRLR 657
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,367,511
Number of Sequences: 1393205
Number of extensions: 13301646
Number of successful extensions: 38904
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 37921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38900
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
