Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013461A_C02 KMC013461A_c02
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_349367.1| Polyferredoxin [Clostridium acetobutylicum] gi|... 32 7.0
ref|NP_005718.2| tetraspan 1; tetraspanin 1; tetraspan NET-1; te... 32 7.0
pir||A59262 tetraspan TSPAN-1 - human gi|2997741|gb|AAC69714.1| ... 32 7.0
pir||T07170 subtilisin-like proteinase (EC 3.4.21.-) 4 - tomato ... 31 9.1
gb|AAN77190.1| unknown [Choristoneura fumiferana granulovirus] 31 9.1
>ref|NP_349367.1| Polyferredoxin [Clostridium acetobutylicum] gi|25501621|pir||H97239
polyferredoxin [imported] - Clostridium acetobutylicum
gi|15025800|gb|AAK80707.1|AE007774_4 Polyferredoxin
[Clostridium acetobutylicum]
Length = 385
Score = 31.6 bits (70), Expect = 7.0
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 186 QVSISYFTILSMNYRSIRLTS*LSISFCSLMTKRLGSISFCTWMSK---LLDIQFNFKAK 356
Q+ I Y IL N+ I L S +SI+ +L+T + FC WM + D+ + +K
Sbjct: 33 QIGILYSNILKGNFDLITLFSSISIAVITLLTTIILGRFFCGWMCSFGFMNDVIYMLSSK 92
Query: 357 VHAPHIK 377
+ K
Sbjct: 93 IFKTKFK 99
>ref|NP_005718.2| tetraspan 1; tetraspanin 1; tetraspan NET-1; tetraspanin TM4-C;
tetraspan TM4SF [Homo sapiens]
gi|12643622|sp|O60635|TSN1_HUMAN Tetraspanin 1 (Tspan-1)
(Tetraspan NET-1) (Tetraspanin TM4-C)
gi|3152701|gb|AAC17119.1| tetraspan NET-1 [Homo sapiens]
gi|6434904|gb|AAF08364.1|AF133425_1 tetraspanin TM4-C
[Homo sapiens] gi|13938321|gb|AAH07290.1|AAH07290
Unknown (protein for MGC:15665) [Homo sapiens]
gi|15426571|gb|AAH13404.1|AAH13404 Unknown (protein for
MGC:4439) [Homo sapiens]
Length = 241
Score = 31.6 bits (70), Expect = 7.0
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -1
Query: 471 LLFFVCLALLLSIGIWVSIL*LVT*LANGVSFL 373
LL F+C A LL++GIWVSI +G SFL
Sbjct: 16 LLIFLCGAALLAVGIWVSI--------DGASFL 40
>pir||A59262 tetraspan TSPAN-1 - human gi|2997741|gb|AAC69714.1| tetraspan
TM4SF; Tspan-1 [Homo sapiens]
Length = 241
Score = 31.6 bits (70), Expect = 7.0
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -1
Query: 471 LLFFVCLALLLSIGIWVSIL*LVT*LANGVSFL 373
LL F+C A LL++GIWVSI +G SFL
Sbjct: 16 LLIFLCGAALLAVGIWVSI--------DGASFL 40
>pir||T07170 subtilisin-like proteinase (EC 3.4.21.-) 4 - tomato
gi|3687303|emb|CAA06998.1| subtilisin-like protease
[Lycopersicon esculentum]
Length = 779
Score = 31.2 bits (69), Expect = 9.1
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 56 LSPRSYYIHFHMHTLTTLSVLAGVPSSRWVTNSEQTTSGLKITSSFDIIFH 208
L P + H H H+ T S+ A VPSS ++ S K+ S+D +FH
Sbjct: 43 LMPNVFTDHHHWHSSTIDSIKASVPSS-----VDRFHSAPKLVYSYDHVFH 88
>gb|AAN77190.1| unknown [Choristoneura fumiferana granulovirus]
Length = 244
Score = 31.2 bits (69), Expect = 9.1
Identities = 17/55 (30%), Positives = 31/55 (55%)
Frame = +1
Query: 34 SIPS*SKAVSQKLLYSFSYAYTNYIVSSSRSSKFKMGNKF*TNYFRSKDNIKFRY 198
S+PS S VS K + F ++++N++ S+SSK + F + +S N+ F +
Sbjct: 7 SVPSNSVFVSSKSFFKFVFSFSNFVFVFSKSSK---SSNFVFVFSKSSFNVVFSF 58
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,439,651
Number of Sequences: 1393205
Number of extensions: 8463044
Number of successful extensions: 17877
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17875
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
