Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013454A_C01 KMC013454A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07863 probable polyprotein - pineapple retrotransposon dea... 37 0.15
emb|CAD40196.1| OSJNBb0043H09.2 [Oryza sativa (japonica cultivar... 33 2.8
ref|NP_174769.1| gypsy/Ty3 element polyprotein, putative; protei... 32 3.6
gb|AAG13508.1|AC068924_13 putative gag-pol polyprotein [Oryza sa... 32 3.6
ref|ZP_00033712.1| hypothetical protein [Burkholderia fungorum] 32 4.8
>pir||T07863 probable polyprotein - pineapple retrotransposon dea1 (fragment)
gi|2995405|emb|CAA73042.1| polyprotein [Ananas comosus]
Length = 871
Score = 37.0 bits (84), Expect = 0.15
Identities = 24/62 (38%), Positives = 36/62 (57%), Gaps = 4/62 (6%)
Frame = +2
Query: 269 TNQMRQQV---RHRRDIQLHVGDMV*SN-NPTL*TRAYQRVNHKLCPRFYGTHEMVEKIN 436
T Q RQ+ R RRD++ VGD V +PT + + + KL PRF G +E++E++
Sbjct: 788 TAQSRQRSYADRRRRDLEFQVGDHVFLKVSPTRGIKRF-GIRGKLSPRFIGPYEILERVG 846
Query: 437 PV 442
PV
Sbjct: 847 PV 848
>emb|CAD40196.1| OSJNBb0043H09.2 [Oryza sativa (japonica cultivar-group)]
Length = 1707
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 263 KATNQMRQQVRHRRDI-QLHVGDMV*SN-NPTL*TRAYQRVNHKLCPRFYGTHEMVEKIN 436
+A QM+ Q +R + +VGD V P + T +R NHKL R++G ++++++
Sbjct: 1504 RAQQQMKSQADKKRSFKEFNVGDWVYLKLQPYIQTSVTKRANHKLEFRYFGPFQVLDRVG 1563
Query: 437 PV 442
V
Sbjct: 1564 AV 1565
>ref|NP_174769.1| gypsy/Ty3 element polyprotein, putative; protein id: At1g35370.1
[Arabidopsis thaliana] gi|25403233|pir||G86474 probable
protein gypsy/Ty3 element polyprotein [imported] -
Arabidopsis thaliana
gi|12322948|gb|AAG51464.1|AC069160_10 gypsy/Ty3 element
polyprotein, putative [Arabidopsis thaliana]
Length = 1447
Score = 32.3 bits (72), Expect = 3.6
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 263 KATNQMRQQV-RHRRDIQLHVGDMV*SN-NPTL*TRAYQRVNHKLCPRFYGTHEMVEKIN 436
+A ++M+Q +HR + +GD V P RVN KL P+++G ++++EK
Sbjct: 1315 RAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCG 1374
Query: 437 PVV 445
V+
Sbjct: 1375 EVM 1377
>gb|AAG13508.1|AC068924_13 putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1608
Score = 32.3 bits (72), Expect = 3.6
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +2
Query: 272 NQMRQQVRHRRDI-----QLHVGDMV*SN-NPTL*TRAYQRVNHKLCPRFYGTHEMVEKI 433
N+ +QQ++H+ D Q VGD V P + T QR HKL R+YG +++ ++
Sbjct: 1381 NRAQQQMKHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRACHKLAFRYYGPFQVMSRV 1440
Query: 434 NPV 442
V
Sbjct: 1441 GTV 1443
>ref|ZP_00033712.1| hypothetical protein [Burkholderia fungorum]
Length = 440
Score = 32.0 bits (71), Expect = 4.8
Identities = 19/49 (38%), Positives = 25/49 (50%)
Frame = -3
Query: 486 YSSSPNHVPASFFYTTGLIFSTISCVP*NLGQSLWFTL**ARVYRVGLL 340
YS++ H+P FF T GL+ +SCV +L RVY VG L
Sbjct: 277 YSTANLHMPREFFLTIGLLVGALSCVTIPCFAALADRFGRRRVYIVGAL 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,604,286
Number of Sequences: 1393205
Number of extensions: 9282665
Number of successful extensions: 22149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22144
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
