Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013445A_C01 KMC013445A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P34342|YK63_CAEEL Hypothetical protein C29E4.3 in chromosome ... 33 3.4
ref|NP_741232.1| RAN (nuclear import/export) related RAN-2 (101.... 33 3.4
ref|NP_741233.1| RAN (nuclear import/export) related RAN-2 (101.... 33 3.4
gb|EAA36009.1| hypothetical protein [Neurospora crassa] 32 5.9
ref|XP_142458.1| similar to envelope protein [Ovis aries] [Mus m... 32 5.9
>sp|P34342|YK63_CAEEL Hypothetical protein C29E4.3 in chromosome III
gi|630551|pir||S44770 C29E4.3 protein - Caenorhabditis
elegans
Length = 1411
Score = 32.7 bits (73), Expect = 3.4
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = -2
Query: 572 YLYLVEDRNLPPMAFSILAPQL-----LQSLNYDNDVEKRVLASYSLLCLIKNSGCVSVL 408
YL+L ED + P LA L L+ LN + CLI+++GC ++
Sbjct: 631 YLWL-EDNTVLPKGAKALAKTLESWPKLEVLNLSD-------------CLIRDAGCNYII 676
Query: 407 PSLNKDSLRHLRNLSLVTWTANELISIVSK 318
LN RHL+N+ L NEL V+K
Sbjct: 677 DHLNPQHHRHLKNVYL---CGNELTPPVAK 703
>ref|NP_741232.1| RAN (nuclear import/export) related RAN-2 (101.8 kD) (ran-2)
[Caenorhabditis elegans]
gi|20451200|gb|AAM22042.1|L23651_7 Ran (nuclear
import/export) related protein 2, isoform b
[Caenorhabditis elegans]
Length = 926
Score = 32.7 bits (73), Expect = 3.4
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = -2
Query: 572 YLYLVEDRNLPPMAFSILAPQL-----LQSLNYDNDVEKRVLASYSLLCLIKNSGCVSVL 408
YL+L ED + P LA L L+ LN + CLI+++GC ++
Sbjct: 631 YLWL-EDNTVLPKGAKALAKTLESWPKLEVLNLSD-------------CLIRDAGCNYII 676
Query: 407 PSLNKDSLRHLRNLSLVTWTANELISIVSK 318
LN RHL+N+ L NEL V+K
Sbjct: 677 DHLNPQHHRHLKNVYL---CGNELTPPVAK 703
>ref|NP_741233.1| RAN (nuclear import/export) related RAN-2 (101.4 kD) (ran-2)
[Caenorhabditis elegans]
gi|16259226|gb|AAK84496.2|L23651_4 Ran (nuclear
import/export) related protein 2, isoform a
[Caenorhabditis elegans]
Length = 923
Score = 32.7 bits (73), Expect = 3.4
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = -2
Query: 572 YLYLVEDRNLPPMAFSILAPQL-----LQSLNYDNDVEKRVLASYSLLCLIKNSGCVSVL 408
YL+L ED + P LA L L+ LN + CLI+++GC ++
Sbjct: 631 YLWL-EDNTVLPKGAKALAKTLESWPKLEVLNLSD-------------CLIRDAGCNYII 676
Query: 407 PSLNKDSLRHLRNLSLVTWTANELISIVSK 318
LN RHL+N+ L NEL V+K
Sbjct: 677 DHLNPQHHRHLKNVYL---CGNELTPPVAK 703
>gb|EAA36009.1| hypothetical protein [Neurospora crassa]
Length = 417
Score = 32.0 bits (71), Expect = 5.9
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = -2
Query: 524 ILAPQLLQSLNYDNDVEKRVLASYSLLCLIKNSGC-------VSVLPSLNKDSLRHLRNL 366
+L +QSL Y ++ +SY L I + G S LP+LN D LR L
Sbjct: 45 LLQTPQIQSLEYSHE-----FSSYLTLLQIFSHGTYADYIANASALPALNDDQKLKLRQL 99
Query: 365 SLVTWTANE 339
SL+T AN+
Sbjct: 100 SLLTLVAND 108
>ref|XP_142458.1| similar to envelope protein [Ovis aries] [Mus musculus]
Length = 293
Score = 32.0 bits (71), Expect = 5.9
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 3/45 (6%)
Frame = -2
Query: 524 ILAPQLLQSLNYDNDVEKRVLASYSLLCLIKNS---GCVSVLPSL 399
+L P + L Y+ V L + L+C +KNS GC+SV P +
Sbjct: 48 LLGPPWTRDLIYNKAVTFNALGNGILICFVKNSTNDGCISVFPQM 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,564,788
Number of Sequences: 1393205
Number of extensions: 7541308
Number of successful extensions: 15123
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15097
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
