Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013417A_C01 KMC013417A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199785.1| FRO1-like protein; NADPH oxidase-like; protein ... 74 4e-14
ref|NP_199784.2| FRO2-like protein; NADPH oxidase-like; protein ... 74 4e-14
dbj|BAA98161.1| FRO2-like protein; NADPH oxidase-like [Arabidops... 74 4e-14
ref|XP_134237.1| similar to open reading frame (251 AA) [Mus mus... 39 0.072
ref|NP_052229.1| ORF13 [Gracilaria chilensis] gi|2921366|gb|AAC0... 38 0.12
>ref|NP_199785.1| FRO1-like protein; NADPH oxidase-like; protein id: At5g49740.1
[Arabidopsis thaliana] gi|8978271|dbj|BAA98162.1|
FRO1-like protein; NADPH oxidase-like [Arabidopsis
thaliana]
Length = 739
Score = 74.3 bits (181), Expect(2) = 4e-14
Identities = 32/56 (57%), Positives = 45/56 (80%)
Frame = -3
Query: 615 QDHIAKSTVLRYGYRPDSKEIFEAMSEKWGNVDVGVLVCGPPTLQSSVAQAIRSHS 448
++ + T +RYG RP +EIFE+++ KWG+VDVGV+VCGP TLQ++VA+ IRSHS
Sbjct: 665 EEDVQNYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHS 720
Score = 25.0 bits (53), Expect(2) = 4e-14
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = -1
Query: 440 RKPPFPIFPFNRHSFDL 390
R P+F FN HSFDL
Sbjct: 723 RSANHPLFHFNSHSFDL 739
>ref|NP_199784.2| FRO2-like protein; NADPH oxidase-like; protein id: At5g49730.1,
supported by cDNA: gi_20268771, supported by cDNA:
gi_21281011 [Arabidopsis thaliana]
gi|20268772|gb|AAM14089.1| putative FRO2; NADPH oxidase
[Arabidopsis thaliana] gi|21281012|gb|AAM45050.1|
putative FRO2; NADPH oxidase [Arabidopsis thaliana]
Length = 738
Score = 74.3 bits (181), Expect(2) = 4e-14
Identities = 32/56 (57%), Positives = 45/56 (80%)
Frame = -3
Query: 615 QDHIAKSTVLRYGYRPDSKEIFEAMSEKWGNVDVGVLVCGPPTLQSSVAQAIRSHS 448
++ + T +RYG RP +EIFE+++ KWG+VDVGV+VCGP TLQ++VA+ IRSHS
Sbjct: 664 EEDVQNYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHS 719
Score = 25.0 bits (53), Expect(2) = 4e-14
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = -1
Query: 440 RKPPFPIFPFNRHSFDL 390
R P+F FN HSFDL
Sbjct: 722 RSANHPLFHFNSHSFDL 738
>dbj|BAA98161.1| FRO2-like protein; NADPH oxidase-like [Arabidopsis thaliana]
Length = 721
Score = 74.3 bits (181), Expect(2) = 4e-14
Identities = 32/56 (57%), Positives = 45/56 (80%)
Frame = -3
Query: 615 QDHIAKSTVLRYGYRPDSKEIFEAMSEKWGNVDVGVLVCGPPTLQSSVAQAIRSHS 448
++ + T +RYG RP +EIFE+++ KWG+VDVGV+VCGP TLQ++VA+ IRSHS
Sbjct: 647 EEDVQNYTTIRYGTRPAFREIFESLNGKWGSVDVGVIVCGPATLQTTVAKEIRSHS 702
Score = 25.0 bits (53), Expect(2) = 4e-14
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = -1
Query: 440 RKPPFPIFPFNRHSFDL 390
R P+F FN HSFDL
Sbjct: 705 RSANHPLFHFNSHSFDL 721
>ref|XP_134237.1| similar to open reading frame (251 AA) [Mus musculus]
Length = 279
Score = 38.5 bits (88), Expect = 0.072
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = -1
Query: 233 ICYSFYVNILSLETYYAQFQLQCCIYLFFFLLSLSHFLAVLLTMSYLSFLSLLVYL 66
+C S Y++I+ L Y + + + C+ ++ LS +L++ L++ LSF+ L VYL
Sbjct: 158 VCLSIYLSIICLSAYLSIYHMSVCLSIY-----LSMYLSIYLSIICLSFIYLSVYL 208
>ref|NP_052229.1| ORF13 [Gracilaria chilensis] gi|2921366|gb|AAC04742.1| ORF13
[Gracilaria chilensis]
Length = 53
Score = 37.7 bits (86), Expect = 0.12
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -1
Query: 212 NILSLETYYAQFQLQCCIYLFFFLLSLSHFLAVLLTMSYL 93
N++ + YY Q CC+Y F FLL+ ++L +++ + +L
Sbjct: 7 NVIECDFYYKQHAATCCLYFFVFLLNRFYYLILIIKLIFL 46
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,448,974
Number of Sequences: 1393205
Number of extensions: 10609279
Number of successful extensions: 25995
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 25168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25926
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
