Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013416A_C01 KMC013416A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA88176.1| unnamed protein product [Oryza sativa (japonica ... 209 2e-53
ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g... 203 1e-51
pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidops... 203 1e-51
ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21... 199 2e-50
emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana] 197 8e-50
>dbj|BAA88176.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 904
Score = 209 bits (532), Expect = 2e-53
Identities = 98/125 (78%), Positives = 109/125 (86%)
Frame = -1
Query: 588 GTVIDNHICHPKHHDFYMCAHAGAIGTSRPTHYHVLHDEIGFTADDLQELVHSLSYVYPR 409
GTV+DN +CHP+++DFYMCAHAG IGT+RPTHYH+LHDEIGF+ADDLQELVHSLSYVY R
Sbjct: 780 GTVVDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQR 839
Query: 408 STTAISVVAPICYAPLAAAQMGPFMKFDEFSETSSSPGSLTSAGPIPVPQLPRLHQAVAH 229
STTAISVVAPICYA LAAAQ+ F+KFDE SETSSS G TSAG PVP+LPRLH V
Sbjct: 840 STTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVPELPRLHNKVRS 899
Query: 228 SMFFC 214
SMFFC
Sbjct: 900 SMFFC 904
>ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g27040.1, supported by
cDNA: gi_14334815, supported by cDNA: gi_15293198
[Arabidopsis thaliana] gi|14334816|gb|AAK59586.1|
putative Argonaute (AGO1) protein [Arabidopsis thaliana]
gi|15293199|gb|AAK93710.1| putative argonaute AGO1
protein [Arabidopsis thaliana] gi|20197419|gb|AAC77862.2|
Argonaute (AGO1)-like protein [Arabidopsis thaliana]
Length = 924
Score = 203 bits (516), Expect = 1e-51
Identities = 96/125 (76%), Positives = 111/125 (88%)
Frame = -1
Query: 588 GTVIDNHICHPKHHDFYMCAHAGAIGTSRPTHYHVLHDEIGFTADDLQELVHSLSYVYPR 409
GT+IDN ICHPK++DFY+CAHAG IGT+RPTHYHVL+DEIGF+AD+LQELVHSLSYVY R
Sbjct: 800 GTIIDNKICHPKNNDFYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQR 859
Query: 408 STTAISVVAPICYAPLAAAQMGPFMKFDEFSETSSSPGSLTSAGPIPVPQLPRLHQAVAH 229
ST+AISVVAPICYA LAAAQ+G FMKF++ SETSSS G +T+ GPI V QLPRL VA+
Sbjct: 860 STSAISVVAPICYAHLAAAQLGTFMKFEDQSETSSSHGGITAPGPISVAQLPRLKDNVAN 919
Query: 228 SMFFC 214
SMFFC
Sbjct: 920 SMFFC 924
>pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidopsis thaliana
Length = 930
Score = 203 bits (516), Expect = 1e-51
Identities = 96/125 (76%), Positives = 111/125 (88%)
Frame = -1
Query: 588 GTVIDNHICHPKHHDFYMCAHAGAIGTSRPTHYHVLHDEIGFTADDLQELVHSLSYVYPR 409
GT+IDN ICHPK++DFY+CAHAG IGT+RPTHYHVL+DEIGF+AD+LQELVHSLSYVY R
Sbjct: 806 GTIIDNKICHPKNNDFYLCAHAGMIGTTRPTHYHVLYDEIGFSADELQELVHSLSYVYQR 865
Query: 408 STTAISVVAPICYAPLAAAQMGPFMKFDEFSETSSSPGSLTSAGPIPVPQLPRLHQAVAH 229
ST+AISVVAPICYA LAAAQ+G FMKF++ SETSSS G +T+ GPI V QLPRL VA+
Sbjct: 866 STSAISVVAPICYAHLAAAQLGTFMKFEDQSETSSSHGGITAPGPISVAQLPRLKDNVAN 925
Query: 228 SMFFC 214
SMFFC
Sbjct: 926 SMFFC 930
>ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21150.1 [Arabidopsis
thaliana] gi|29294055|gb|AAO73892.1| PAZ (Piwi Argonaut
and Zwille) family [Arabidopsis thaliana]
Length = 892
Score = 199 bits (506), Expect = 2e-50
Identities = 91/125 (72%), Positives = 107/125 (84%)
Frame = -1
Query: 588 GTVIDNHICHPKHHDFYMCAHAGAIGTSRPTHYHVLHDEIGFTADDLQELVHSLSYVYPR 409
GT+ID+ ICHP++ DFY+CAHAG IGT+RPTHYHVL+DEIGF DDLQELVHSLSYVY R
Sbjct: 768 GTIIDSQICHPRNFDFYLCAHAGMIGTTRPTHYHVLYDEIGFATDDLQELVHSLSYVYQR 827
Query: 408 STTAISVVAPICYAPLAAAQMGPFMKFDEFSETSSSPGSLTSAGPIPVPQLPRLHQAVAH 229
STTAISVVAP+CYA LAAAQMG MK++E SETSSS G +T+ G +PVP +P+LH V+
Sbjct: 828 STTAISVVAPVCYAHLAAAQMGTVMKYEELSETSSSHGGITTPGAVPVPPMPQLHNNVST 887
Query: 228 SMFFC 214
SMFFC
Sbjct: 888 SMFFC 892
>emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana]
Length = 896
Score = 197 bits (501), Expect = 8e-50
Identities = 90/125 (72%), Positives = 107/125 (85%)
Frame = -1
Query: 588 GTVIDNHICHPKHHDFYMCAHAGAIGTSRPTHYHVLHDEIGFTADDLQELVHSLSYVYPR 409
GT+ID+ ICHP++ DFY+CAHAG IGT+RPTHYHVL+DEIGF DDLQELVHSLS+VY R
Sbjct: 772 GTIIDSQICHPRNFDFYLCAHAGMIGTTRPTHYHVLYDEIGFATDDLQELVHSLSHVYQR 831
Query: 408 STTAISVVAPICYAPLAAAQMGPFMKFDEFSETSSSPGSLTSAGPIPVPQLPRLHQAVAH 229
STTAISVVAP+CYA LAAAQMG MK++E SETSSS G +T+ G +PVP +P+LH V+
Sbjct: 832 STTAISVVAPVCYAHLAAAQMGTVMKYEELSETSSSHGGITTPGTVPVPPMPQLHNNVST 891
Query: 228 SMFFC 214
SMFFC
Sbjct: 892 SMFFC 896
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,745,464
Number of Sequences: 1393205
Number of extensions: 12749417
Number of successful extensions: 39261
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 37559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39216
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
