Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013403A_C01 KMC013403A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703372.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.2
ref|NP_705041.1| methionyl-tRNA formyltransferase, putative [Pla... 32 6.8
ref|NP_702245.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.9
ref|NP_702284.1| hypothetical protein, conserved [Plasmodium fal... 31 8.9
>ref|NP_703372.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504512|emb|CAD51392.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1156
Score = 32.0 bits (71), Expect = 5.2
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = +3
Query: 174 CIIIISHGFSRNYESKQYLLLINKHFIYYTTF*K*YLKCLRD*IEYICSNFKKELGFLNC 353
C I + F+ N K L L +K + Y LKC+ D ++ F N
Sbjct: 726 CNIYKDNIFNNNNNEKCLLFLFHKRILKY-------LKCINDYTTFL-------FPFNNS 771
Query: 354 KIIMQIVYVTNYHFMSINWIQ*IYERG--PITQEKMHQTKI*VTSFKKTDLSNIYTYISP 527
K + + N I++I+ I E+ +EK TK +KK L N+ Y++
Sbjct: 772 KACQEGL---NLKKKMISFIKHIKEKSLKNCKREKWKGTK-----YKKVKLRNMNFYVNM 823
Query: 528 LKKKSSQKY 554
+KK+ +KY
Sbjct: 824 VKKREERKY 832
>ref|NP_705041.1| methionyl-tRNA formyltransferase, putative [Plasmodium falciparum
3D7] gi|23615286|emb|CAD52276.1| methionyl-tRNA
formyltransferase, putative [Plasmodium falciparum 3D7]
Length = 665
Score = 31.6 bits (70), Expect = 6.8
Identities = 27/102 (26%), Positives = 49/102 (47%), Gaps = 2/102 (1%)
Frame = -1
Query: 309 ILSNLLDILNIISKMLYNI*NAY*LEVNIVWTRNYVKIHDLLLLCTHVNQTFVV*KMIYV 130
+ N LD +NI+ +L+N Y + + NY++ + + + Y
Sbjct: 130 LYKNQLDDINILYILLFNTLMIYKKKYDFFMNENYIRSYYYIYKNNLGRDKKIYNTKNYF 189
Query: 129 LYTF-ITFFTSIK-YMRVVYLFVFVFV*KSLVIKHFYGIDIR 10
+ TF IT++ +IK YM ++L + + +L K FY IDI+
Sbjct: 190 INTFSITWYNTIKPYMNNIFLEILNIIENTLGNKIFY-IDIK 230
>ref|NP_702245.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497426|gb|AAN36969.1|AE014822_4 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 586
Score = 31.2 bits (69), Expect = 8.9
Identities = 22/74 (29%), Positives = 36/74 (47%)
Frame = -1
Query: 324 NLNIYILSNLLDILNIISKMLYNI*NAY*LEVNIVWTRNYVKIHDLLLLCTHVNQTFVV* 145
N N Y+L+N DI+ YN+ N+Y L NY+ H LLL+ + + +
Sbjct: 349 NNNKYVLNNKRDIITTEQNDYYNVCNSYIL--------NYLPFHLLLLILLNYDNKNI-- 398
Query: 144 KMIYVLYTFITFFT 103
++Y+L I +T
Sbjct: 399 -LLYLLNICINEYT 411
>ref|NP_702284.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23497465|gb|AAN37008.1|AE014822_43 hypothetical
protein, conserved [Plasmodium falciparum 3D7]
Length = 569
Score = 31.2 bits (69), Expect = 8.9
Identities = 15/58 (25%), Positives = 31/58 (52%)
Frame = +2
Query: 341 LSKLQNNYANSLRDKLSFYVH*LDTMNLRKRTHYTRENASNKDLSNIVQKNRSE*HIY 514
+ ++NNY+ S + +FY + + N K+ +Y ++N SN + +N + + IY
Sbjct: 419 IQNMENNYSESNTNDKNFYQPKIYSYNQNKQYNYIKDNYSNNNNNNNYNNDELDDGIY 476
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,846,128
Number of Sequences: 1393205
Number of extensions: 8238879
Number of successful extensions: 15854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15842
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
