Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013383A_C01 KMC013383A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK83642.1| AT5g66560/K1F13_23 [Arabidopsis thaliana] gi|2411... 155 4e-37
ref|NP_201457.1| photoreceptor-interacting protein-like; protein... 155 4e-37
dbj|BAB10932.1| photoreceptor-interacting protein-like [Arabidop... 143 1e-33
ref|NP_174332.1| non-phototropic hypocotyl, putative; protein id... 114 1e-24
pir||G86428 F26G16.2 protein - Arabidopsis thaliana gi|6634762|g... 114 1e-24
>gb|AAK83642.1| AT5g66560/K1F13_23 [Arabidopsis thaliana]
gi|24111403|gb|AAN46836.1| At5g66560/K1F13_23
[Arabidopsis thaliana]
Length = 668
Score = 155 bits (392), Expect = 4e-37
Identities = 79/147 (53%), Positives = 103/147 (69%), Gaps = 23/147 (15%)
Frame = -1
Query: 372 SSEKHSSKGQAWFCTTGLPSDMVVEVDDMTFHLHKFPLMSKSRKLHDLITQQEEATRSTL 193
+SEK +SKGQAWFCTTGLPSD+ +EVDDMTFHLHKFPLMSKSRKLH LIT+QE + S++
Sbjct: 2 ASEKSTSKGQAWFCTTGLPSDIEIEVDDMTFHLHKFPLMSKSRKLHRLITEQETRSSSSM 61
Query: 192 -------PQQQQ----------EEDEDEDEIVEEQLQ------VTFTDFPGGSDAFEMAA 82
P+ ++ E+D++E+E+ E++++ + DFPG S++FEM A
Sbjct: 62 ALITVIDPKVEETDKKGKGHEIEDDKEEEEVEEQEIEENGYPHIKLEDFPGSSESFEMVA 121
Query: 81 KFCYGVKTELSPCNVASLRCAGEFLEM 1
KFCYGVK +LS V LRCA E LEM
Sbjct: 122 KFCYGVKMDLSASTVVPLRCAAEHLEM 148
>ref|NP_201457.1| photoreceptor-interacting protein-like; protein id: At5g66560.1,
supported by cDNA: gi_15146317 [Arabidopsis thaliana]
Length = 668
Score = 155 bits (392), Expect = 4e-37
Identities = 79/147 (53%), Positives = 103/147 (69%), Gaps = 23/147 (15%)
Frame = -1
Query: 372 SSEKHSSKGQAWFCTTGLPSDMVVEVDDMTFHLHKFPLMSKSRKLHDLITQQEEATRSTL 193
+SEK +SKGQAWFCTTGLPSD+ +EVDDMTFHLHKFPLMSKSRKLH LIT+QE + S++
Sbjct: 2 ASEKSTSKGQAWFCTTGLPSDIEIEVDDMTFHLHKFPLMSKSRKLHRLITEQETRSSSSM 61
Query: 192 -------PQQQQ----------EEDEDEDEIVEEQLQ------VTFTDFPGGSDAFEMAA 82
P+ ++ E+D++E+E+ E++++ + DFPG S++FEM A
Sbjct: 62 ALITVIDPKVEETDKKGKGHEIEDDKEEEEVEEQEIEENGYPHIKLEDFPGSSESFEMVA 121
Query: 81 KFCYGVKTELSPCNVASLRCAGEFLEM 1
KFCYGVK +LS V LRCA E LEM
Sbjct: 122 KFCYGVKMDLSASTVVPLRCAAEHLEM 148
>dbj|BAB10932.1| photoreceptor-interacting protein-like [Arabidopsis thaliana]
Length = 597
Score = 143 bits (361), Expect = 1e-33
Identities = 74/124 (59%), Positives = 85/124 (67%)
Frame = -1
Query: 372 SSEKHSSKGQAWFCTTGLPSDMVVEVDDMTFHLHKFPLMSKSRKLHDLITQQEEATRSTL 193
+SEK +SKGQAWFCTTGLPSD+ +EVDDMTFHLHKFPLMSKSRKLH LIT+QE T++
Sbjct: 2 ASEKSTSKGQAWFCTTGLPSDIEIEVDDMTFHLHKFPLMSKSRKLHRLITEQE--TKNGY 59
Query: 192 PQQQQEEDEDEDEIVEEQLQVTFTDFPGGSDAFEMAAKFCYGVKTELSPCNVASLRCAGE 13
P + DFPG S++FEM AKFCYGVK +LS V LRCA E
Sbjct: 60 P------------------HIKLEDFPGSSESFEMVAKFCYGVKMDLSASTVVPLRCAAE 101
Query: 12 FLEM 1
LEM
Sbjct: 102 HLEM 105
>ref|NP_174332.1| non-phototropic hypocotyl, putative; protein id: At1g30440.1
[Arabidopsis thaliana]
Length = 665
Score = 114 bits (284), Expect = 1e-24
Identities = 59/125 (47%), Positives = 76/125 (60%)
Frame = -1
Query: 375 SSSEKHSSKGQAWFCTTGLPSDMVVEVDDMTFHLHKFPLMSKSRKLHDLITQQEEATRST 196
S S+ +GQAWFCTTGLPSD+VVEV +M+FHLHKFPL+S+S + I + +
Sbjct: 8 SKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASK----- 62
Query: 195 LPQQQQEEDEDEDEIVEEQLQVTFTDFPGGSDAFEMAAKFCYGVKTELSPCNVASLRCAG 16
E +D+ + + +D PGG FE+ AKFCYGVK EL+ NV LRCA
Sbjct: 63 ---------EGDDKCL-----IEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAA 108
Query: 15 EFLEM 1
E LEM
Sbjct: 109 EHLEM 113
>pir||G86428 F26G16.2 protein - Arabidopsis thaliana
gi|6634762|gb|AAF19742.1|AC009917_1 Contains a bZIP
transcription factor PF|00170 domain. ESTs gb|R30400,
gb|AA650964, gb|AI994521 come from this gene.
[Arabidopsis thaliana]
Length = 662
Score = 114 bits (284), Expect = 1e-24
Identities = 59/125 (47%), Positives = 76/125 (60%)
Frame = -1
Query: 375 SSSEKHSSKGQAWFCTTGLPSDMVVEVDDMTFHLHKFPLMSKSRKLHDLITQQEEATRST 196
S S+ +GQAWFCTTGLPSD+VVEV +M+FHLHKFPL+S+S + I + +
Sbjct: 5 SKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASK----- 59
Query: 195 LPQQQQEEDEDEDEIVEEQLQVTFTDFPGGSDAFEMAAKFCYGVKTELSPCNVASLRCAG 16
E +D+ + + +D PGG FE+ AKFCYGVK EL+ NV LRCA
Sbjct: 60 ---------EGDDKCL-----IEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAA 105
Query: 15 EFLEM 1
E LEM
Sbjct: 106 EHLEM 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,080,770
Number of Sequences: 1393205
Number of extensions: 11155803
Number of successful extensions: 81358
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 46729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67566
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
