Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013377A_C01 KMC013377A_c01
(437 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195786.1| putative protein; protein id: At5g01660.1 [Arab... 46 9e-05
dbj|BAB64795.1| P0701D05.9 [Oryza sativa (japonica cultivar-group)] 39 0.011
dbj|BAC65044.1| P0458H05.15 [Oryza sativa (japonica cultivar-gro... 33 0.80
ref|NP_220820.1| unknown [Rickettsia prowazekii] gi|7388423|sp|Q... 32 2.3
gb|EAA20916.1| karyopherin beta [Plasmodium yoelii yoelii] 31 3.1
>ref|NP_195786.1| putative protein; protein id: At5g01660.1 [Arabidopsis thaliana]
gi|11357827|pir||T48187 hypothetical protein F7A7.180 -
Arabidopsis thaliana gi|7327825|emb|CAB82282.1| putative
protein [Arabidopsis thaliana]
Length = 621
Score = 46.2 bits (108), Expect = 9e-05
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = -3
Query: 435 IYVIGGV-GVADHFVYTVANYKEGQGWKEIYTAAPIQRCFLSAIA 304
IYVIGG G D + TV +KEG+GWK + +++ +RCFLSA+A
Sbjct: 576 IYVIGGYKGEEDDILDTVECFKEGEGWKNVPSSSIGRRCFLSAVA 620
>dbj|BAB64795.1| P0701D05.9 [Oryza sativa (japonica cultivar-group)]
Length = 697
Score = 39.3 bits (90), Expect = 0.011
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -3
Query: 432 YVIGGVGVADHFVYTVANYKEGQGWKEIYTAAPIQRCFLSAIA 304
Y+IGG+ ++ +V TV YKEGQGW + A +R F A+A
Sbjct: 654 YLIGGIQSSEEYVETVEVYKEGQGWSISGSKAFGKRAFACAVA 696
>dbj|BAC65044.1| P0458H05.15 [Oryza sativa (japonica cultivar-group)]
Length = 726
Score = 33.1 bits (74), Expect = 0.80
Identities = 18/44 (40%), Positives = 24/44 (53%), Gaps = 1/44 (2%)
Frame = -3
Query: 435 IYVIGGV-GVADHFVYTVANYKEGQGWKEIYTAAPIQRCFLSAI 307
I+ GGV G D + V YKEG GW + + +RC+ SAI
Sbjct: 681 IFAFGGVKGEGDAILDVVERYKEGCGWVTTESRSIGRRCYCSAI 724
>ref|NP_220820.1| unknown [Rickettsia prowazekii] gi|7388423|sp|Q9ZDA3|Y439_RICPR
Hypothetical protein RP439 gi|7467757|pir||F71702
hypothetical protein RP439 - Rickettsia prowazekii
gi|3860996|emb|CAA14896.1| unknown [Rickettsia
prowazekii]
Length = 391
Score = 31.6 bits (70), Expect = 2.3
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 94 YKVGSGSDNIIIRTLQIIYYNGFE---CLGPVHIISSQDKSNYLYPMTLQKKTTAAMKSL 264
Y+ S ++ Q + FE GP SS K+ YL ++ TT MK
Sbjct: 194 YRFASQKGMLVFGDYQYGGHRTFEEQLVFGPEDCSSSVGKATYLSNEQIKSITTTQMKEN 253
Query: 265 YSLYDYLL 288
YS YDY L
Sbjct: 254 YSKYDYKL 261
>gb|EAA20916.1| karyopherin beta [Plasmodium yoelii yoelii]
Length = 1126
Score = 31.2 bits (69), Expect = 3.1
Identities = 30/95 (31%), Positives = 43/95 (44%), Gaps = 11/95 (11%)
Frame = +1
Query: 163 ECLGPVHIISSQDKSNYLYPMTLQKKTTAAMKSLYSL--------YDYLLSLMAGGNS*Q 318
E + IIS Q +N M L TT++ K L SL Y+Y+L +M +
Sbjct: 745 ELIEAARIISDQTDNNK--SMLLAILTTSSEKVLKSLSDTKLDDNYEYVLDIMII----E 798
Query: 319 ETPLYRC---CCVNFLPSLTFLIIRNCIYKMVSYS 414
LY C N LP+ T + N I+K++ YS
Sbjct: 799 SNGLYMCLQKAGANILPNNTLKMFFNEIFKLLQYS 833
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,526,960
Number of Sequences: 1393205
Number of extensions: 7787384
Number of successful extensions: 14740
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14732
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
