Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013351A_C01 KMC013351A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79654.1|AC025416_28 F5O11.15 [Arabidopsis thaliana] 100 8e-21
ref|NP_563908.1| armadillo-repeat-containing kinesin-related pro... 100 8e-21
ref|NP_171697.2| armadillo-repeat-containing kinesin-related pro... 94 8e-19
pir||D86151 F22M8.8 protein - Arabidopsis thaliana gi|8570446|gb... 94 8e-19
pir||T06733 kinesin homolog F28P10.150 - Arabidopsis thaliana 52 6e-06
>gb|AAF79654.1|AC025416_28 F5O11.15 [Arabidopsis thaliana]
Length = 895
Score = 100 bits (250), Expect = 8e-21
Identities = 46/61 (75%), Positives = 55/61 (89%)
Frame = -1
Query: 535 LALCHLAQHEVNARHMIREGALWELDRIARDCSREDIKTLAHRTLVSSPTFQAEMRRLRV 356
LALCHLAQHE NA+ M++EGA+WEL RI+RDCSREDI++LAHRTL SSPTF E+RRLRV
Sbjct: 833 LALCHLAQHEGNAKEMVKEGAMWELVRISRDCSREDIRSLAHRTLTSSPTFLTELRRLRV 892
Query: 355 N 353
+
Sbjct: 893 D 893
>ref|NP_563908.1| armadillo-repeat-containing kinesin-related protein; protein id:
At1g12430.1, supported by cDNA: gi_9954167 [Arabidopsis
thaliana] gi|9954168|gb|AAG08965.1|AF159052_1
kinesin-like protein [Arabidopsis thaliana]
Length = 919
Score = 100 bits (250), Expect = 8e-21
Identities = 46/61 (75%), Positives = 55/61 (89%)
Frame = -1
Query: 535 LALCHLAQHEVNARHMIREGALWELDRIARDCSREDIKTLAHRTLVSSPTFQAEMRRLRV 356
LALCHLAQHE NA+ M++EGA+WEL RI+RDCSREDI++LAHRTL SSPTF E+RRLRV
Sbjct: 857 LALCHLAQHEGNAKEMVKEGAMWELVRISRDCSREDIRSLAHRTLTSSPTFLTELRRLRV 916
Query: 355 N 353
+
Sbjct: 917 D 917
>ref|NP_171697.2| armadillo-repeat-containing kinesin-related protein; protein id:
At1g01950.1 [Arabidopsis thaliana]
Length = 897
Score = 94.4 bits (233), Expect = 8e-19
Identities = 43/62 (69%), Positives = 54/62 (86%)
Frame = -1
Query: 535 LALCHLAQHEVNARHMIREGALWELDRIARDCSREDIKTLAHRTLVSSPTFQAEMRRLRV 356
LALCHLAQHEVNA+ MI GALWEL RI+++CSREDI++LAHRTL SSP F++E+RRL +
Sbjct: 836 LALCHLAQHEVNAKEMISGGALWELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGI 895
Query: 355 NY 350
+
Sbjct: 896 QF 897
>pir||D86151 F22M8.8 protein - Arabidopsis thaliana
gi|8570446|gb|AAF76473.1|AC020622_7 Contains similarity
to a kinesin homolog from Arabidopsis thaliana gb|T06733
and contains a Kinesin motor PF|00225 domain and multiple
Armadillo/beta-catenin-like PF|00514 repeats
Length = 885
Score = 94.4 bits (233), Expect = 8e-19
Identities = 43/62 (69%), Positives = 54/62 (86%)
Frame = -1
Query: 535 LALCHLAQHEVNARHMIREGALWELDRIARDCSREDIKTLAHRTLVSSPTFQAEMRRLRV 356
LALCHLAQHEVNA+ MI GALWEL RI+++CSREDI++LAHRTL SSP F++E+RRL +
Sbjct: 824 LALCHLAQHEVNAKEMISGGALWELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGI 883
Query: 355 NY 350
+
Sbjct: 884 QF 885
>pir||T06733 kinesin homolog F28P10.150 - Arabidopsis thaliana
Length = 1070
Score = 51.6 bits (122), Expect = 6e-06
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = -1
Query: 535 LALCHLAQHEVNARHMIREGALWELDRIARDCSREDIKTLAHRTLVSSPTFQA 377
LALCHLAQ+E NA R G++ E+ RI+ + SR+DI++LA + L ++P F +
Sbjct: 1018 LALCHLAQNEENANDFKRTGSVTEIVRISVESSRDDIRSLAKKILKTNPYFSS 1070
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,255,404
Number of Sequences: 1393205
Number of extensions: 8636947
Number of successful extensions: 16996
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16991
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
