Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013324A_C01 KMC013324A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42061.1| unknown protein [Arabidopsis thaliana] 69 4e-11
ref|NP_180382.1| hypothetical protein; protein id: At2g28150.1 [... 69 4e-11
gb|AAL08561.1| auxin-regulated protein [Lycopersicon esculentum] 57 1e-07
ref|NP_200787.1| putative protein; protein id: At5g59790.1, supp... 55 8e-07
dbj|BAC42479.1| unknown protein [Arabidopsis thaliana] gi|289509... 54 2e-06
>dbj|BAC42061.1| unknown protein [Arabidopsis thaliana]
Length = 540
Score = 68.9 bits (167), Expect = 4e-11
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = -3
Query: 517 RSYKNGFVWHDLCEDDKSLPAHGNKNVLKGSELFDKSNS 401
RSY+NGFVWHDL EDD LPA+GN+ VLKGSELFD+SNS
Sbjct: 89 RSYRNGFVWHDLSEDDLILPANGNEYVLKGSELFDESNS 127
>ref|NP_180382.1| hypothetical protein; protein id: At2g28150.1 [Arabidopsis
thaliana] gi|25407956|pir||D84681 hypothetical protein
At2g28150 [imported] - Arabidopsis thaliana
gi|4063743|gb|AAC98451.1| hypothetical protein
[Arabidopsis thaliana]
Length = 541
Score = 68.9 bits (167), Expect = 4e-11
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = -3
Query: 517 RSYKNGFVWHDLCEDDKSLPAHGNKNVLKGSELFDKSNS 401
RSY+NGFVWHDL EDD LPA+GN+ VLKGSELFD+SNS
Sbjct: 97 RSYRNGFVWHDLSEDDLILPANGNEYVLKGSELFDESNS 135
>gb|AAL08561.1| auxin-regulated protein [Lycopersicon esculentum]
Length = 433
Score = 57.4 bits (137), Expect = 1e-07
Identities = 25/37 (67%), Positives = 29/37 (77%)
Frame = -3
Query: 517 RSYKNGFVWHDLCEDDKSLPAHGNKNVLKGSELFDKS 407
RSY+NGFVWHDL E+D PAHG + VLKGSEL D +
Sbjct: 92 RSYRNGFVWHDLTENDFIYPAHGQEYVLKGSELLDSA 128
>ref|NP_200787.1| putative protein; protein id: At5g59790.1, supported by cDNA:
gi_20260479 [Arabidopsis thaliana]
gi|9757899|dbj|BAB08346.1|
gb|AAC98451.1~gene_id:MMN10.1~similar to unknown protein
[Arabidopsis thaliana] gi|20260480|gb|AAM13138.1|
unknown protein [Arabidopsis thaliana]
Length = 423
Score = 54.7 bits (130), Expect = 8e-07
Identities = 24/35 (68%), Positives = 26/35 (73%)
Frame = -3
Query: 517 RSYKNGFVWHDLCEDDKSLPAHGNKNVLKGSELFD 413
RSYKNGFVWHDL EDD P G + VLKGSE+ D
Sbjct: 102 RSYKNGFVWHDLSEDDFIFPVQGQEYVLKGSEVLD 136
>dbj|BAC42479.1| unknown protein [Arabidopsis thaliana] gi|28950915|gb|AAO63381.1|
At3g46110 [Arabidopsis thaliana]
Length = 343
Score = 53.5 bits (127), Expect = 2e-06
Identities = 22/47 (46%), Positives = 32/47 (67%)
Frame = -3
Query: 517 RSYKNGFVWHDLCEDDKSLPAHGNKNVLKGSELFDKSNSVKKISFIS 377
R+YKNGFVW+DL ++D P HG + VLKGS++ D N+ S ++
Sbjct: 75 RTYKNGFVWYDLSDEDFIFPVHGQEYVLKGSQILDLDNNSGNFSAVT 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,511,822
Number of Sequences: 1393205
Number of extensions: 9940197
Number of successful extensions: 24333
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24324
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
