Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013320A_C01 KMC013320A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG25927.1|AF260918_1 anthocyanin 1 [Petunia x hybrida] gi|10... 110 2e-23
ref|NP_192720.1| bHLH protein; protein id: At4g09820.1 [Arabidop... 86 5e-16
sp|Q9FT81|TT8_ARATH TRANSPARENT TESTA 8 protein 86 5e-16
emb|CAC14865.1| transparent testa 8 [Arabidopsis thaliana] 86 5e-16
pir||T04073 intensifier 1 protein - maize gi|1420924|gb|AAB03841... 84 2e-15
>gb|AAG25927.1|AF260918_1 anthocyanin 1 [Petunia x hybrida]
gi|10998406|gb|AAG25928.1|AF260919_1 anthocyanin 1
[Petunia x hybrida]
Length = 668
Score = 110 bits (274), Expect = 2e-23
Identities = 52/75 (69%), Positives = 67/75 (89%)
Frame = -1
Query: 635 IESDALLELECPHREGLLLDVMQMLREMRIEVTGVQSSLNNGVFVAELRAKVKEYVSGKK 456
IESDAL+EL CP++EGLLLDVMQMLRE+++EV +QSSLNNG F AELRAKVKE + G+K
Sbjct: 592 IESDALVELRCPYKEGLLLDVMQMLRELKVEVVTIQSSLNNGSFFAELRAKVKENIYGRK 651
Query: 455 VSIVEVKRALNQIIP 411
SI+EVK++++Q+IP
Sbjct: 652 ASILEVKKSIHQLIP 666
>ref|NP_192720.1| bHLH protein; protein id: At4g09820.1 [Arabidopsis thaliana]
gi|7485598|pir||T04030 hypothetical protein F17A8.170 -
Arabidopsis thaliana gi|4538912|emb|CAB39649.1| putative
protein [Arabidopsis thaliana]
gi|7267678|emb|CAB78105.1| putative protein [Arabidopsis
thaliana]
Length = 379
Score = 85.5 bits (210), Expect = 5e-16
Identities = 43/80 (53%), Positives = 60/80 (74%)
Frame = -1
Query: 635 IESDALLELECPHREGLLLDVMQMLREMRIEVTGVQSSLNNGVFVAELRAKVKEYVSGKK 456
IE+D LLE+ C +R+GLLLD++Q+L E+ IE T V +S+N+ F AE+RAKV+ GKK
Sbjct: 304 IENDVLLEMRCEYRDGLLLDILQVLHELGIETTAVHTSVNDHDFEAEIRAKVR----GKK 359
Query: 455 VSIVEVKRALNQIIPHTRNV 396
SI EVKRA++Q+I H N+
Sbjct: 360 ASIAEVKRAIHQVIIHDTNL 379
>sp|Q9FT81|TT8_ARATH TRANSPARENT TESTA 8 protein
Length = 518
Score = 85.5 bits (210), Expect = 5e-16
Identities = 43/80 (53%), Positives = 60/80 (74%)
Frame = -1
Query: 635 IESDALLELECPHREGLLLDVMQMLREMRIEVTGVQSSLNNGVFVAELRAKVKEYVSGKK 456
IE+D LLE+ C +R+GLLLD++Q+L E+ IE T V +S+N+ F AE+RAKV+ GKK
Sbjct: 443 IENDVLLEMRCEYRDGLLLDILQVLHELGIETTAVHTSVNDHDFEAEIRAKVR----GKK 498
Query: 455 VSIVEVKRALNQIIPHTRNV 396
SI EVKRA++Q+I H N+
Sbjct: 499 ASIAEVKRAIHQVIIHDTNL 518
>emb|CAC14865.1| transparent testa 8 [Arabidopsis thaliana]
Length = 518
Score = 85.5 bits (210), Expect = 5e-16
Identities = 43/80 (53%), Positives = 60/80 (74%)
Frame = -1
Query: 635 IESDALLELECPHREGLLLDVMQMLREMRIEVTGVQSSLNNGVFVAELRAKVKEYVSGKK 456
IE+D LLE+ C +R+GLLLD++Q+L E+ IE T V +S+N+ F AE+RAKV+ GKK
Sbjct: 443 IENDVLLEMRCEYRDGLLLDILQVLHELGIETTAVHTSVNDHDFEAEIRAKVR----GKK 498
Query: 455 VSIVEVKRALNQIIPHTRNV 396
SI EVKRA++Q+I H N+
Sbjct: 499 ASIAEVKRAIHQVIIHDTNL 518
>pir||T04073 intensifier 1 protein - maize gi|1420924|gb|AAB03841.1| IN1 [Zea
mays]
Length = 685
Score = 83.6 bits (205), Expect = 2e-15
Identities = 47/75 (62%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Frame = -1
Query: 635 IESDALLELECPHREGLLLDVMQML-REMRIEVTGVQSSLNNGVFVAELRAKVKEYVSGK 459
I SDALLEL CPHREGLLL VMQ L +E+R+E+T VQ+S V +A+LRAKVKE V G+
Sbjct: 599 IGSDALLELRCPHREGLLLRVMQALHQELRLEITSVQASSAGDVLLAKLRAKVKE-VHGR 657
Query: 458 KVSIVEVKRALNQII 414
+ SI EVKRA++ I+
Sbjct: 658 RSSITEVKRAIHLIV 672
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,842,906
Number of Sequences: 1393205
Number of extensions: 11501126
Number of successful extensions: 46644
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 37613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44961
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
