Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013316A_C01 KMC013316A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178636.1| putative membrane transporter; protein id: At2g... 47 2e-04
ref|NP_180966.1| putative membrane transporter; protein id: At2g... 45 9e-04
gb|AAK59632.1| putative membrane transporter protein [Arabidopsi... 45 9e-04
dbj|BAB61205.1| putative permease 1 [Oryza sativa (japonica cult... 40 0.016
gb|AAL76261.1|AF466824_1 putative permease 1 [Arabidopsis thaliana] 35 0.52
>ref|NP_178636.1| putative membrane transporter; protein id: At2g05760.1 [Arabidopsis
thaliana] gi|25309276|pir||D84471 probable membrane
transporter [imported] - Arabidopsis thaliana
gi|4662639|gb|AAD26910.1| putative membrane transporter
[Arabidopsis thaliana]
Length = 520
Score = 46.6 bits (109), Expect = 2e-04
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -3
Query: 575 GDDSNEEFYTSPFNLNRFFPPT 510
GD+ NEEFYT PFNLNRFFPPT
Sbjct: 499 GDNRNEEFYTLPFNLNRFFPPT 520
>ref|NP_180966.1| putative membrane transporter; protein id: At2g34190.1, supported
by cDNA: gi_14334907 [Arabidopsis thaliana]
gi|7488005|pir||T02307 probable membrane transporter
At2g34190 [imported] - Arabidopsis thaliana
gi|3337350|gb|AAC27395.1| putative membrane transporter
[Arabidopsis thaliana] gi|23297127|gb|AAN13099.1|
putative membrane transporter [Arabidopsis thaliana]
Length = 524
Score = 44.7 bits (104), Expect = 9e-04
Identities = 18/22 (81%), Positives = 19/22 (85%)
Frame = -3
Query: 575 GDDSNEEFYTSPFNLNRFFPPT 510
GD NEEFYT PFNLNRFFPP+
Sbjct: 503 GDSRNEEFYTLPFNLNRFFPPS 524
>gb|AAK59632.1| putative membrane transporter protein [Arabidopsis thaliana]
Length = 524
Score = 44.7 bits (104), Expect = 9e-04
Identities = 18/22 (81%), Positives = 19/22 (85%)
Frame = -3
Query: 575 GDDSNEEFYTSPFNLNRFFPPT 510
GD NEEFYT PFNLNRFFPP+
Sbjct: 503 GDSRNEEFYTLPFNLNRFFPPS 524
>dbj|BAB61205.1| putative permease 1 [Oryza sativa (japonica cultivar-group)]
gi|20804662|dbj|BAB92350.1| putative permease 1 [Oryza
sativa (japonica cultivar-group)]
Length = 524
Score = 40.4 bits (93), Expect = 0.016
Identities = 16/22 (72%), Positives = 19/22 (85%)
Frame = -3
Query: 575 GDDSNEEFYTSPFNLNRFFPPT 510
GD +EEFY+ PFNLNRFFPP+
Sbjct: 503 GDARSEEFYSLPFNLNRFFPPS 524
>gb|AAL76261.1|AF466824_1 putative permease 1 [Arabidopsis thaliana]
Length = 216
Score = 35.4 bits (80), Expect = 0.52
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -3
Query: 575 GDDSNEEFYTSPFNLNRFFP 516
GD +EEFY+ PFNLN++FP
Sbjct: 195 GDTRSEEFYSLPFNLNKYFP 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,108,870
Number of Sequences: 1393205
Number of extensions: 9482897
Number of successful extensions: 18514
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18482
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
