Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013308A_C01 KMC013308A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177882.1| putative acyl-CoA synthetase; protein id: At1g7... 104 8e-22
gb|AAO22689.1| putative acyl-CoA synthetase [Arabidopsis thaliana] 104 8e-22
emb|CAC19877.1| long chain acyl-CoA synthetase [Brassica napus] 102 2e-21
ref|NP_178516.1| putative acyl-CoA synthetase; protein id: At2g0... 98 7e-20
gb|AAK96568.1| T23O15.3/T23O15.3 [Arabidopsis thaliana] 98 7e-20
>ref|NP_177882.1| putative acyl-CoA synthetase; protein id: At1g77590.1, supported by
cDNA: gi_20805878 [Arabidopsis thaliana]
gi|25293396|pir||D96805 probable acyl-CoA synthetase,
62297-59022 [imported] - Arabidopsis thaliana
gi|12323387|gb|AAG51668.1|AC010704_12 putative acyl-CoA
synthetase; 62297-59022 [Arabidopsis thaliana]
gi|20805879|gb|AAM28876.1|AF503759_1 long chain acyl-CoA
synthetase 9 [Arabidopsis thaliana]
Length = 691
Score = 104 bits (259), Expect = 8e-22
Identities = 49/69 (71%), Positives = 62/69 (89%)
Frame = +2
Query: 23 CTKEETVKEVHASLVKEAKKARLEKFEIPAQIKLLSDPWSPESGLVTAALKIQRETIPKA 202
CTKE+ VKEV+ASLVK AK++RLEKFEIPA+IKLL+ PW+PESGLVTAALK++R+ I +
Sbjct: 622 CTKEQAVKEVYASLVKAAKQSRLEKFEIPAKIKLLASPWTPESGLVTAALKLKRDVIRRE 681
Query: 203 FQEELSKLY 229
F E+L+KLY
Sbjct: 682 FSEDLTKLY 690
>gb|AAO22689.1| putative acyl-CoA synthetase [Arabidopsis thaliana]
Length = 399
Score = 104 bits (259), Expect = 8e-22
Identities = 49/69 (71%), Positives = 62/69 (89%)
Frame = +2
Query: 23 CTKEETVKEVHASLVKEAKKARLEKFEIPAQIKLLSDPWSPESGLVTAALKIQRETIPKA 202
CTKE+ VKEV+ASLVK AK++RLEKFEIPA+IKLL+ PW+PESGLVTAALK++R+ I +
Sbjct: 330 CTKEQAVKEVYASLVKAAKQSRLEKFEIPAKIKLLASPWTPESGLVTAALKLKRDVIRRE 389
Query: 203 FQEELSKLY 229
F E+L+KLY
Sbjct: 390 FSEDLTKLY 398
>emb|CAC19877.1| long chain acyl-CoA synthetase [Brassica napus]
Length = 693
Score = 102 bits (255), Expect = 2e-21
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = +2
Query: 23 CTKEETVKEVHASLVKEAKKARLEKFEIPAQIKLLSDPWSPESGLVTAALKIQRETIPKA 202
C KE+ VKEV+ASLVK AK++RLEKFEIPA+IK+L+ PW+PESGLVTAALK++R+ I K
Sbjct: 623 CAKEQPVKEVYASLVKAAKQSRLEKFEIPAKIKVLAAPWTPESGLVTAALKLKRDVIRKE 682
Query: 203 FQEELSKLYTS 235
F E+L+KLY S
Sbjct: 683 FSEDLTKLYAS 693
>ref|NP_178516.1| putative acyl-CoA synthetase; protein id: At2g04350.1, supported by
cDNA: gi_15450592, supported by cDNA: gi_20805876
[Arabidopsis thaliana] gi|25293398|pir||E84456 probable
acyl-CoA synthetase [imported] - Arabidopsis thaliana
gi|4587615|gb|AAD25843.1| putative acyl-CoA synthetase
[Arabidopsis thaliana] gi|20198205|gb|AAM15458.1|
putative acyl-CoA synthetase [Arabidopsis thaliana]
gi|20805877|gb|AAM28875.1|AF503758_1 long chain acyl-CoA
synthetase 8 [Arabidopsis thaliana]
gi|25090427|gb|AAN72299.1| At2g04350/T23O15.3
[Arabidopsis thaliana]
Length = 720
Score = 97.8 bits (242), Expect = 7e-20
Identities = 48/69 (69%), Positives = 56/69 (80%)
Frame = +2
Query: 23 CTKEETVKEVHASLVKEAKKARLEKFEIPAQIKLLSDPWSPESGLVTAALKIQRETIPKA 202
C K E VKEV SL K K A+LEKFE+PA+IKLLS+PW+PESGLVTAALKI+RE I
Sbjct: 651 CEKGEAVKEVQQSLTKAGKAAKLEKFELPAKIKLLSEPWTPESGLVTAALKIKREQIKSK 710
Query: 203 FQEELSKLY 229
F++ELSKLY
Sbjct: 711 FKDELSKLY 719
>gb|AAK96568.1| T23O15.3/T23O15.3 [Arabidopsis thaliana]
Length = 720
Score = 97.8 bits (242), Expect = 7e-20
Identities = 48/69 (69%), Positives = 56/69 (80%)
Frame = +2
Query: 23 CTKEETVKEVHASLVKEAKKARLEKFEIPAQIKLLSDPWSPESGLVTAALKIQRETIPKA 202
C K E VKEV SL K K A+LEKFE+PA+IKLLS+PW+PESGLVTAALKI+RE I
Sbjct: 651 CEKGEAVKEVQQSLTKAGKAAKLEKFELPAKIKLLSEPWTPESGLVTAALKIKREQIKSK 710
Query: 203 FQEELSKLY 229
F++ELSKLY
Sbjct: 711 FKDELSKLY 719
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,102,292
Number of Sequences: 1393205
Number of extensions: 8837584
Number of successful extensions: 18536
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 18125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18526
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
