Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013300A_C01 KMC013300A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10014.1| GTP-binding protein LepA homolog [Arabidopsis th... 69 5e-11
ref|NP_196482.2| GTP-binding protein LepA, putative; protein id:... 69 5e-11
gb|AAM12957.1| GTP-binding protein LepA homolog [Arabidopsis tha... 69 5e-11
gb|ZP_00058281.1| hypothetical protein [Thermobifida fusca] 65 6e-10
ref|NP_486548.1| GTP-binding elongation factor [Nostoc sp. PCC 7... 64 1e-09
>dbj|BAB10014.1| GTP-binding protein LepA homolog [Arabidopsis thaliana]
Length = 675
Score = 68.6 bits (166), Expect = 5e-11
Identities = 33/39 (84%), Positives = 34/39 (86%)
Frame = -3
Query: 571 LRDALEKL*LNDVALKFEPETSGAMGFDFRCGFLGLHHI 455
LRDALEKL LND ALKFEPETS AMGF FRCGFLGL H+
Sbjct: 385 LRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHM 423
>ref|NP_196482.2| GTP-binding protein LepA, putative; protein id: At5g08650.1,
supported by cDNA: gi_20260117 [Arabidopsis thaliana]
Length = 681
Score = 68.6 bits (166), Expect = 5e-11
Identities = 33/39 (84%), Positives = 34/39 (86%)
Frame = -3
Query: 571 LRDALEKL*LNDVALKFEPETSGAMGFDFRCGFLGLHHI 455
LRDALEKL LND ALKFEPETS AMGF FRCGFLGL H+
Sbjct: 391 LRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHM 429
>gb|AAM12957.1| GTP-binding protein LepA homolog [Arabidopsis thaliana]
gi|22136082|gb|AAM91119.1| GTP-binding protein LepA-like
protein [Arabidopsis thaliana]
Length = 681
Score = 68.6 bits (166), Expect = 5e-11
Identities = 33/39 (84%), Positives = 34/39 (86%)
Frame = -3
Query: 571 LRDALEKL*LNDVALKFEPETSGAMGFDFRCGFLGLHHI 455
LRDALEKL LND ALKFEPETS AMGF FRCGFLGL H+
Sbjct: 391 LRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHM 429
>gb|ZP_00058281.1| hypothetical protein [Thermobifida fusca]
Length = 645
Score = 65.1 bits (157), Expect = 6e-10
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = -3
Query: 571 LRDALEKL*LNDVALKFEPETSGAMGFDFRCGFLGLHHI 455
LRDALEKL LND AL FEPETS A+GF FRCGFLGL H+
Sbjct: 349 LRDALEKLQLNDAALVFEPETSAALGFGFRCGFLGLLHL 387
>ref|NP_486548.1| GTP-binding elongation factor [Nostoc sp. PCC 7120]
gi|24211917|sp|Q8YU48|LEPA_ANASP GTP-Binding protein
lepA gi|25299777|pir||AE2119 GTP-binding elongation
factor [imported] - Nostoc sp. (strain PCC 7120)
gi|17131600|dbj|BAB74207.1| GTP-binding elongation
factor [Nostoc sp. PCC 7120]
Length = 603
Score = 64.3 bits (155), Expect = 1e-09
Identities = 30/39 (76%), Positives = 34/39 (86%)
Frame = -3
Query: 571 LRDALEKL*LNDVALKFEPETSGAMGFDFRCGFLGLHHI 455
LR+ALEKL LND AL++EPETS AMGF FRCGFLGL H+
Sbjct: 315 LREALEKLRLNDAALQYEPETSSAMGFGFRCGFLGLLHM 353
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,164,036
Number of Sequences: 1393205
Number of extensions: 9967043
Number of successful extensions: 18820
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 18248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18813
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
