Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013296A_C01 KMC013296A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201227.2| calmodulin-binding protein; protein id: At5g642... 36 0.40
gb|EAA11939.1| ebiP4480 [Anopheles gambiae str. PEST] 33 2.0
emb|CAA06534.2| aS2-casein [Bubalus bubalis] 33 3.4
ref|NP_704261.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.4
gb|AAC61492.2| outer membrane protein; P95 [Mycoplasma hyopneumo... 32 4.4
>ref|NP_201227.2| calmodulin-binding protein; protein id: At5g64220.1 [Arabidopsis
thaliana]
Length = 1076
Score = 35.8 bits (81), Expect = 0.40
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 43 NHSKITKQTKCSNLQSKAAKWPPLNPHCLHSQHGDISQAK*NLKKSLEIKSHFPEKKNHK 222
NHS T N+ S A + L+P C + GD QA +L+++ E ++ P+ +H+
Sbjct: 154 NHSNSLSGTGSVNVDSTATRSSILSPLCEDADSGDSRQASSSLQQNPEPQTVVPQIMHHQ 213
Query: 223 NTDT 234
N T
Sbjct: 214 NAST 217
>gb|EAA11939.1| ebiP4480 [Anopheles gambiae str. PEST]
Length = 774
Score = 33.5 bits (75), Expect = 2.0
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = -3
Query: 572 PHTEYDQSMLHSEEMPVEEKIVTVERSYSKKYKAPFKGLLREEEKEEEAHLLLMPQPPDN 393
P + ++ +L +E + + +S Y+AP + + +EA L + P PP N
Sbjct: 252 PEEDAEEQLLIKQEQEIGAFVPITFEDFSSMYRAPAETEAVPLQSHQEAALPVQPPPPTN 311
Query: 392 HGWTKKEVSSTSPQGKEKRKPRSSF 318
+ K+ + S + K P+ +F
Sbjct: 312 ERHSSKKTAKDSLLARSK-PPKGAF 335
>emb|CAA06534.2| aS2-casein [Bubalus bubalis]
Length = 210
Score = 32.7 bits (73), Expect = 3.4
Identities = 23/76 (30%), Positives = 35/76 (45%), Gaps = 3/76 (3%)
Frame = +2
Query: 86 NPRQQSGLH*IPTACTLN---MVTSLKQSKI*KNLSRSKVIFRKKKITRTLTQRRRVKEK 256
NP Q + +P TLN + TS + SK ++ ++VI +K K+T R +K
Sbjct: 110 NPWDQVKRNAVPITPTLNREQLSTSEENSKKTVDMESTEVITKKTKLTEEDKNRLNFLKK 169
Query: 257 CKYSSEGFNWPQLNNT 304
+ F WPQ T
Sbjct: 170 ISQHYQKFTWPQYLKT 185
>ref|NP_704261.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499000|emb|CAD51080.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2130
Score = 32.3 bits (72), Expect = 4.4
Identities = 20/76 (26%), Positives = 38/76 (49%)
Frame = -1
Query: 520 KRK*LLWKEVTQRNIKLHSKVF*EKKKKKKKHIFYSCHNHQITMVGPRRKCHLLHLKGKK 341
K K +L KE+ + + H K +KKK K+I+ + HNH I + +L++
Sbjct: 1958 KIKEILNKEIVHKMVHNHIKKNNNEKKKINKYIYPNLHNHHIPTNCYDQNINLINNNNNN 2017
Query: 340 SASLDLHSSAASCVVQ 293
+ + + +++ CV Q
Sbjct: 2018 NNNNNNNNNNNMCVTQ 2033
>gb|AAC61492.2| outer membrane protein; P95 [Mycoplasma hyopneumoniae]
Length = 1144
Score = 32.3 bits (72), Expect = 4.4
Identities = 21/66 (31%), Positives = 35/66 (52%)
Frame = -3
Query: 518 EKIVTVERSYSKKYKAPFKGLLREEEKEEEAHLLLMPQPPDNHGWTKKEVSSTSPQGKEK 339
+KI+++E++ +KKY PF L+ E E+E+ L N T K S+T+ ++
Sbjct: 580 KKILSLEKAEAKKYIEPFFEALKTEISEKESKKLEKKATNLNQK-TAKNSSTTAISSEKN 638
Query: 338 RKPRSS 321
KP S
Sbjct: 639 EKPEKS 644
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,604,986
Number of Sequences: 1393205
Number of extensions: 11026192
Number of successful extensions: 38107
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 35482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37845
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
