Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013286A_C01 KMC013286A_c01
(804 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD47139.1|AF077335_1 Anthocyaninless2 [Arabidopsis thaliana] 58 2e-07
emb|CAB96423.1| OCL3 protein [Zea mays] 43 0.006
gb|AAB41901.1| homeodomain protein AHDP [Arabidopsis thaliana] 40 0.052
gb|AAG43405.1|AF172931_1 homeobox 1 [Picea abies] 39 0.12
gb|EAA35683.1| hypothetical protein [Neurospora crassa] 38 0.15
>gb|AAD47139.1|AF077335_1 Anthocyaninless2 [Arabidopsis thaliana]
Length = 801
Score = 57.8 bits (138), Expect = 2e-07
Identities = 41/122 (33%), Positives = 60/122 (48%), Gaps = 15/122 (12%)
Frame = +3
Query: 468 MSFGGFLDSNNSGGGGGGGRNIAADVPYSNGNTTNDRMAFGAISQPRLVTT--TPSLAKP 641
M+FG D N+ GGG G + + + Y N + + GA++Q + +P L K
Sbjct: 1 MNFGSLFD--NTPGGGSTGARLLSGLSYGNHTAATNVLPGGAMAQAAAAASLFSPPLTKS 58
Query: 642 MFTSPGLSLALQQSNIDGQEDVNRMCEPNGL------------KRSREEE-QSRSGSDNM 782
++ S GLSLAL+Q M N + +RSREEE +SRSGSDN+
Sbjct: 59 VYASSGLSLALEQPERGTNRGEASMRNNNNVGGGGDTFDGSVNRRSREEEHESRSGSDNV 118
Query: 783 DG 788
+G
Sbjct: 119 EG 120
>emb|CAB96423.1| OCL3 protein [Zea mays]
Length = 863
Score = 42.7 bits (99), Expect = 0.006
Identities = 45/131 (34%), Positives = 56/131 (42%), Gaps = 22/131 (16%)
Frame = +3
Query: 468 MSFGGFLDSNNSG-------GGGGGGRNIAADVPYSNGNTTNDRMAFGAISQPRLVTTTP 626
MSFGG D SG GGG G N VP P
Sbjct: 1 MSFGGMFDGAGSGVFSYDATGGGTGMHNPGRLVP------------------------AP 36
Query: 627 SLAKPM-FTSPGLSLALQQSNIDGQE--DVNRMC-----------EPNGLKRSREEE-QS 761
L KP F + GLSL LQ +N++G + D+ RM + + L R RE+E S
Sbjct: 37 PLPKPGGFGATGLSLGLQ-TNMEGAQLGDLGRMGLIGGGGSGSGGDGDSLGRGREDEIDS 95
Query: 762 RSGSDNMDGGA 794
RSGSDN+DG +
Sbjct: 96 RSGSDNVDGAS 106
>gb|AAB41901.1| homeodomain protein AHDP [Arabidopsis thaliana]
Length = 745
Score = 39.7 bits (91), Expect = 0.052
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Frame = +3
Query: 621 TPSLAKPMFTSPGLSLALQQSNIDGQEDVNRMCEPNGL------------KRSREEE-QS 761
+P L K ++ S GLSLAL+Q M N + +RSREEE +S
Sbjct: 12 SPPLTKSVYASSGLSLALEQPERGTNRGEASMRNNNNVGGGGDTFDGSVNRRSREEEHES 71
Query: 762 RSGSDNMDG 788
RSGSDN++G
Sbjct: 72 RSGSDNVEG 80
>gb|AAG43405.1|AF172931_1 homeobox 1 [Picea abies]
Length = 763
Score = 38.5 bits (88), Expect = 0.12
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 648 TSPGLSLALQQSNIDGQEDVNRMCEPNGLKRSREEEQSRSGSDNMDGGASCD 803
TS GLSLA Q + +GQ D+++ + K EE +S+SGSDN++G + D
Sbjct: 26 TSSGLSLA-QPNMAEGQFDMSQTADSEIAKIREEEFESKSGSDNVEGASGED 76
>gb|EAA35683.1| hypothetical protein [Neurospora crassa]
Length = 604
Score = 38.1 bits (87), Expect = 0.15
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = -3
Query: 589 PKAILSLVVLPLL*GTSAAMFLPPPPPPPELL------LSRKPPKLIKEATFS 449
PKA+L VVL L ++ + F PPPP P LL L+ PP I+EAT S
Sbjct: 8 PKALLGKVVLLSLLSSATSAFNPPPPIPDTLLNHQQVPLNLNPPFDIREATIS 60
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 757,034,441
Number of Sequences: 1393205
Number of extensions: 17772189
Number of successful extensions: 128425
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 70956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108361
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
