Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013266A_C01 KMC013266A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P50192|MTHA_HAEPH Modification methylase HphIA (Cytosine-spec... 35 0.44
sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 gi|7... 35 0.44
emb|CAC15462.1| putative polyprenol-phosphate-mannose synthase 2... 33 1.3
ref|NP_008390.1|ND4_13342 NADH dehydrogenase subunit 4 [Floromet... 33 2.2
gb|ZP_00048505.1| hypothetical protein [Magnetospirillum magneto... 33 2.2
>sp|P50192|MTHA_HAEPH Modification methylase HphIA (Cytosine-specific methyltransferase
HphIA) (M.HphIA) (M.Hphi(C)) gi|2148052|pir||S70707
site-specific DNA-methyltransferase (cytosine-specific)
(EC 2.1.1.73) HphI - Haemophilus parahaemolyticus (ATCC
49700) gi|732729|emb|CAA59690.1| site-specific
DNA-methyltransferase (cytosine-specific) [Haemophilus
parahaemolyticus]
Length = 372
Score = 35.0 bits (79), Expect = 0.44
Identities = 21/61 (34%), Positives = 36/61 (58%), Gaps = 2/61 (3%)
Frame = -1
Query: 301 YILIASLFF-LLWLRCVKVVLLSSG-YCWVLSVFEYSFSSLGFFPLGFSYGGFNEALSCD 128
+I+++S+++ ++ L C+K L YC L+ + FS G F LGF GF++ LS +
Sbjct: 15 FIILSSIYYWMILLYCIKFFLSKYLIYCMSLTYIDL-FSGAGGFSLGFDRAGFHQLLSVE 73
Query: 127 I 125
I
Sbjct: 74 I 74
>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 gi|76351|pir||QQUTC5 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Trypanosoma brucei mitochondrion
gi|343540|gb|AAB59225.1| NADH dehydrogenase subunit 5
gi|6015581|emb|CAB57807.1| unidentified reading frame 10
[Trypanosoma brucei]
Length = 590
Score = 35.0 bits (79), Expect = 0.44
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Frame = -1
Query: 334 YYWCLVHT*I-LYILIASLFFLLWLRCVKVVLLSSGYC--WVLSVFEYSFSSLGFF---- 176
Y CLV+ I LY+ I S+FF++ C+ V S YC W + Y+F + F
Sbjct: 452 YECCLVYCLISLYMCILSIFFIIDFVCIFVF---SSYCVFWSFFLNFYNFFDIAIFVVFL 508
Query: 175 --PLGFSYGGFNEALSCDILDIKIAQGYWAVCFILSWLVLNLL 53
+GF Y G L +I +W + F++ LV+ ++
Sbjct: 509 ILSVGFLYYG---CLFFYFFNIDCIMLFWRIFFVIIILVVFMI 548
>emb|CAC15462.1| putative polyprenol-phosphate-mannose synthase 2 (Ppm2)
[Mycobacterium smegmatis]
Length = 594
Score = 33.5 bits (75), Expect = 1.3
Identities = 27/69 (39%), Positives = 32/69 (46%)
Frame = -2
Query: 270 FG*GVLKSCYCLVAIVGFCLCLSTLFPP*GFSHWVFPMVVLMRLSHVTF*TSK*HKGTGL 91
FG GVL C L A +G L L FPP G+ FP + L+ T+K G G
Sbjct: 59 FGKGVLDRCAPLSAAIGGGLALWLSFPPIGWWFTAFPGLALLGWVLTRTATTK-AGGFGY 117
Query: 90 FVLFCLGLY 64
VLF L Y
Sbjct: 118 GVLFGLAFY 126
>ref|NP_008390.1|ND4_13342 NADH dehydrogenase subunit 4 [Florometra serratissima]
gi|7432326|pir||T11124 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - Florometra serratissima
mitochondrion gi|2970431|gb|AAD05081.1| NADH
dehydrogenase subunit 4 [Florometra serratissima]
Length = 457
Score = 32.7 bits (73), Expect = 2.2
Identities = 27/91 (29%), Positives = 42/91 (45%), Gaps = 5/91 (5%)
Frame = -1
Query: 433 LAVRKLLLETVLQEIMSPFEREGSLNSLESSRLYYWCLVHT*ILYILIASLFFLLWLRCV 254
L++ + ET L I+ R GS + +Y+ + Y L+ SL FL+ L +
Sbjct: 115 LSLFYISFETTLIPILVIISRWGSQYERYQASIYF-------MFYTLVGSLPFLVSLLSI 167
Query: 253 KVVLLSS-----GYCWVLSVFEYSFSSLGFF 176
V L S YC++ + SFSSL +F
Sbjct: 168 NVFLGSLFFPFFNYCFIFELLYNSFSSLWWF 198
>gb|ZP_00048505.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 306
Score = 32.7 bits (73), Expect = 2.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -1
Query: 307 ILYILIASLFFLLWLRCVKVVLLSSGYC----WVLSVFEYSFSSL 185
ILY+L+ + W++ +K VLL +G WVL+ F ++ S L
Sbjct: 94 ILYVLVGGMKGTTWVQIIKAVLLIAGAAVMTVWVLAKFGFNLSDL 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,750,535
Number of Sequences: 1393205
Number of extensions: 8119346
Number of successful extensions: 18405
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18396
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
