Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013263A_C01 KMC013263A_c01
(355 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O77695|BGLR_CERAE Beta-glucuronidase precursor gi|3549609|gb|... 32 1.6
ref|NP_000172.1| glucuronidase, beta [Homo sapiens] gi|114963|sp... 32 2.0
gb|AAH14142.1|AAH14142 Similar to glucuronidase, beta [Homo sapi... 32 2.0
pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution... 32 2.0
gb|EAA42766.1| GLP_81_179251_180519 [Giardia lamblia ATCC 50803] 32 2.7
>sp|O77695|BGLR_CERAE Beta-glucuronidase precursor gi|3549609|gb|AAC34593.1|
beta-glucuronidase [Cercopithecus aethiops]
Length = 648
Score = 32.3 bits (72), Expect = 1.6
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 143 PYILHDSLTFLYNLKAKLKCKTNL-PHIPFCTLPI 244
PY++H+ +LY+L+ +L +T+L P F TLP+
Sbjct: 287 PYLMHERPAYLYSLEVRLTAQTSLGPVSDFYTLPV 321
>ref|NP_000172.1| glucuronidase, beta [Homo sapiens] gi|114963|sp|P08236|BGLR_HUMAN
Beta-glucuronidase precursor (Beta-G1)
gi|86948|pir||A26581 beta-glucuronidase (EC 3.2.1.31)
precursor - human gi|183233|gb|AAA52561.1|
beta-glucuronidase precursor (EC 3.2.1.31)
Length = 651
Score = 32.0 bits (71), Expect = 2.0
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 143 PYILHDSLTFLYNLKAKLKCKTNL-PHIPFCTLPI 244
PY++H+ +LY+L+ +L +T+L P F TLP+
Sbjct: 290 PYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPV 324
>gb|AAH14142.1|AAH14142 Similar to glucuronidase, beta [Homo sapiens]
Length = 651
Score = 32.0 bits (71), Expect = 2.0
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 143 PYILHDSLTFLYNLKAKLKCKTNL-PHIPFCTLPI 244
PY++H+ +LY+L+ +L +T+L P F TLP+
Sbjct: 290 PYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPV 324
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
gi|2554777|pdb|1BHG|B Chain B, Human Beta-Glucuronidase
At 2.6 A Resolution
Length = 613
Score = 32.0 bits (71), Expect = 2.0
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 143 PYILHDSLTFLYNLKAKLKCKTNL-PHIPFCTLPI 244
PY++H+ +LY+L+ +L +T+L P F TLP+
Sbjct: 270 PYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPV 304
>gb|EAA42766.1| GLP_81_179251_180519 [Giardia lamblia ATCC 50803]
Length = 422
Score = 31.6 bits (70), Expect = 2.7
Identities = 15/47 (31%), Positives = 28/47 (58%)
Frame = -3
Query: 335 MMLRISYRQMKIMNLLVRIHFQEIVRKAYMELEGCKKECEVDLFCIL 195
+ML + M+ +N L+++ F+E R+ + +EGC+ E DL +L
Sbjct: 366 LMLPVDDSNMEDINELIQLAFKECPREYTLTIEGCEIRGETDLVQVL 412
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,246,055
Number of Sequences: 1393205
Number of extensions: 4937587
Number of successful extensions: 23200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22715
length of database: 448,689,247
effective HSP length: 93
effective length of database: 319,121,182
effective search space used: 7658908368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
