Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013260A_C01 KMC013260A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_077875.1| conserved hypothetical membrane lipoprotein [Ur... 35 0.27
ref|XP_134598.2| RIKEN cDNA G630055P03 gene [Mus musculus] 34 0.36
gb|AAD26585.1|AF136577_1 unknown [Synechococcus sp. PCC 7002] 32 1.8
ref|NP_523132.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum] g... 32 1.8
gb|AAA96327.1| latent transforming growth factor-binding protein 32 2.3
>ref|NP_077875.1| conserved hypothetical membrane lipoprotein [Ureaplasma
urealyticum] gi|11292028|pir||B82940 conserved
hypothetical membrane lipoprotein UU045 [imported] -
Ureaplasma urealyticum
gi|6898993|gb|AAF30450.1|AE002104_3 conserved
hypothetical membrane lipoprotein [Ureaplasma
urealyticum]
Length = 834
Score = 34.7 bits (78), Expect = 0.27
Identities = 23/62 (37%), Positives = 31/62 (49%), Gaps = 10/62 (16%)
Frame = +3
Query: 30 NFFFLYWVRSDQAPNRNRPNQPKWS----RFFSIT------QPATRPDRTEKAFFGSGPV 179
+FFF +V DQ R R N W+ RFF+ QPA P+RTE+ + S +
Sbjct: 623 DFFFKAYVDDDQLKYRTRDNFSLWTNSDYRFFNNLTQQEGGQPAFPPERTERGNYLSYAI 682
Query: 180 GF 185
GF
Sbjct: 683 GF 684
>ref|XP_134598.2| RIKEN cDNA G630055P03 gene [Mus musculus]
Length = 515
Score = 34.3 bits (77), Expect = 0.36
Identities = 20/46 (43%), Positives = 25/46 (53%)
Frame = +1
Query: 61 TRLQTVTDRTNPNGAGFSPLLNPPPDPTEPRRPFLVAGRSVSVGPK 198
TRLQ+ +DR+ P A SP L P P P EPR G + + PK
Sbjct: 299 TRLQSRSDRSGP-AASPSPFLEPQPPPAEPRE---AVGSNEAAEPK 340
>gb|AAD26585.1|AF136577_1 unknown [Synechococcus sp. PCC 7002]
Length = 229
Score = 32.0 bits (71), Expect = 1.8
Identities = 24/66 (36%), Positives = 33/66 (49%), Gaps = 5/66 (7%)
Frame = +3
Query: 174 PVGFGRAQKSWTSLLGAIRTNIS*LTVYVQSVTE*YK*ELRAQDRQLLSFGKLEK----- 338
PVGFG+ +S+ SL+ A +T L + V +V Y +DR LSF EK
Sbjct: 64 PVGFGQVSRSFPSLVEAYKTT-DVLKIPVATVQRIYDQSADFRDRYNLSFELREKFQYHL 122
Query: 339 LNCGQF 356
LNC +
Sbjct: 123 LNCSTY 128
>ref|NP_523132.1| HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
gi|17432047|emb|CAD18724.1| HYPOTHETICAL PROTEIN
[Ralstonia solanacearum]
Length = 494
Score = 32.0 bits (71), Expect = 1.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 211 LVQLFWARPKPTGPLPKKAFSVRSGRVAG*VMEKNRLH 98
LV + WA P+GP+ + AF R+AG ++E +R H
Sbjct: 64 LVTVLWAAANPSGPVTEDAFE----RIAGEIVEASRRH 97
>gb|AAA96327.1| latent transforming growth factor-binding protein
Length = 346
Score = 31.6 bits (70), Expect = 2.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 79 TDRTN-PNGAGFSPLLNPPPDPTEPRRPFLVAGR 177
T RT+ P GA L PPP P EP RP + G+
Sbjct: 85 TRRTSKPGGAALQGLRPPPPPPPEPARPAVPGGQ 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,511,424
Number of Sequences: 1393205
Number of extensions: 10069669
Number of successful extensions: 30790
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 27767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30711
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
