Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013259A_C01 KMC013259A_c01
(461 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK74027.1| AT3g16840/K20I9_6 [Arabidopsis thaliana] 77 9e-14
ref|NP_188307.2| DEAD/DEAH box RNA helicase, putative; protein i... 77 9e-14
dbj|BAA95778.1| ATP-dependent RNA helicase [Arabidopsis thaliana] 77 9e-14
gb|AAK96666.1| ATP-dependent RNA helicase [Arabidopsis thaliana] 77 9e-14
gb|AAG24515.1|AF297866_1 Hu-Claspin [Homo sapiens] 44 8e-04
>gb|AAK74027.1| AT3g16840/K20I9_6 [Arabidopsis thaliana]
Length = 142
Score = 77.0 bits (188), Expect = 9e-14
Identities = 46/137 (33%), Positives = 76/137 (54%), Gaps = 2/137 (1%)
Frame = +2
Query: 56 SSQRKAKRKSRTLASGDPELERLNSLSWNPTFP-QQDDDNDPFS-LFIGSNELEGGFLSL 229
SS K + K + + ER++SL W+ + P +DD+ + FS LF GS +L+GGFLSL
Sbjct: 8 SSLMKKRNKRSHKRKREEDFERIDSLPWSSSIPIGEDDEGESFSTLFSGSGQLDGGFLSL 67
Query: 230 EEIDEADYGMDIHKPGGDDNKKQVVPKQGKKLKKQKHDGVDGARSSDDVPEVETDGEIVK 409
EEIDEADY + + + +++ P+ + + ++G + +D +G +
Sbjct: 68 EEIDEADYHLTLPTIESEITERKQSPEDDDDTNETVDEMIEGEEAEED-----GEGRDDE 122
Query: 410 DEEVKTEVKKKKKKKNK 460
D+E E +KKK+KK K
Sbjct: 123 DDEDDEETRKKKEKKAK 139
>ref|NP_188307.2| DEAD/DEAH box RNA helicase, putative; protein id: At3g16840.1
[Arabidopsis thaliana]
Length = 832
Score = 77.0 bits (188), Expect = 9e-14
Identities = 46/137 (33%), Positives = 76/137 (54%), Gaps = 2/137 (1%)
Frame = +2
Query: 56 SSQRKAKRKSRTLASGDPELERLNSLSWNPTFP-QQDDDNDPFS-LFIGSNELEGGFLSL 229
SS K + K + + ER++SL W+ + P +DD+ + FS LF GS +L+GGFLSL
Sbjct: 8 SSLMKKRNKRSHKRKREEDFERIDSLPWSSSIPIGEDDEGESFSTLFSGSGQLDGGFLSL 67
Query: 230 EEIDEADYGMDIHKPGGDDNKKQVVPKQGKKLKKQKHDGVDGARSSDDVPEVETDGEIVK 409
EEIDEADY + + + +++ P+ + + ++G + +D +G +
Sbjct: 68 EEIDEADYHLTLPTIESEITERKQSPEDDDDTNETVDEMIEGEEAEED-----GEGRDDE 122
Query: 410 DEEVKTEVKKKKKKKNK 460
D+E E +KKK+KK K
Sbjct: 123 DDEDDEETRKKKEKKAK 139
>dbj|BAA95778.1| ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 832
Score = 77.0 bits (188), Expect = 9e-14
Identities = 46/137 (33%), Positives = 76/137 (54%), Gaps = 2/137 (1%)
Frame = +2
Query: 56 SSQRKAKRKSRTLASGDPELERLNSLSWNPTFP-QQDDDNDPFS-LFIGSNELEGGFLSL 229
SS K + K + + ER++SL W+ + P +DD+ + FS LF GS +L+GGFLSL
Sbjct: 8 SSLMKKRNKRSHKRKREEDFERIDSLPWSSSIPIGEDDEGESFSTLFSGSGQLDGGFLSL 67
Query: 230 EEIDEADYGMDIHKPGGDDNKKQVVPKQGKKLKKQKHDGVDGARSSDDVPEVETDGEIVK 409
EEIDEADY + + + +++ P+ + + ++G + +D +G +
Sbjct: 68 EEIDEADYHLTLPTIESEITERKQSPEDDDDTNETVDEMIEGEEAEED-----GEGRDDE 122
Query: 410 DEEVKTEVKKKKKKKNK 460
D+E E +KKK+KK K
Sbjct: 123 DDEDDEETRKKKEKKAK 139
>gb|AAK96666.1| ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 797
Score = 77.0 bits (188), Expect = 9e-14
Identities = 46/137 (33%), Positives = 76/137 (54%), Gaps = 2/137 (1%)
Frame = +2
Query: 56 SSQRKAKRKSRTLASGDPELERLNSLSWNPTFP-QQDDDNDPFS-LFIGSNELEGGFLSL 229
SS K + K + + ER++SL W+ + P +DD+ + FS LF GS +L+GGFLSL
Sbjct: 8 SSLMKKRNKRSHKRKREEDFERIDSLPWSSSIPIGEDDEGESFSTLFSGSGQLDGGFLSL 67
Query: 230 EEIDEADYGMDIHKPGGDDNKKQVVPKQGKKLKKQKHDGVDGARSSDDVPEVETDGEIVK 409
EEIDEADY + + + +++ P+ + + ++G + +D +G +
Sbjct: 68 EEIDEADYHLTLPTIESEITERKQSPEDDDDTNETVDEMIEGEEAEED-----GEGRDDE 122
Query: 410 DEEVKTEVKKKKKKKNK 460
D+E E +KKK+KK K
Sbjct: 123 DDEDDEETRKKKEKKAK 139
>gb|AAG24515.1|AF297866_1 Hu-Claspin [Homo sapiens]
Length = 1332
Score = 43.9 bits (102), Expect = 8e-04
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 20/152 (13%)
Frame = +2
Query: 44 AATPSSQRKAKRKSRTLASGDPELERLNSLSWN-PTFPQQDDDNDPFSLF-IGSNELEGG 217
A+TP+S K++ + + GDP E L S + PT +++D+ + F F + SN+ E
Sbjct: 953 ASTPASSELNKQEKES-SMGDPMEEALALCSGSFPTDKEEEDEEEEFGDFRLVSNDNE-- 1009
Query: 218 FLSLEEIDEADYGMDIHKPGGDDNKKQVVPKQGKKLKKQ----KHDGVDGARSSDDV-PE 382
+E + +D G D+ +D+ ++ + K+ +KLK+Q K+ + S DV E
Sbjct: 1010 -FDSDEDEHSDSGNDLALEDHEDDDEEELLKRSEKLKRQMRLRKYLEDEAEVSGSDVGSE 1068
Query: 383 VETDGEIV-------------KDEEVKTEVKK 439
E DGE + DEE+++++KK
Sbjct: 1069 DEYDGEEIDEYEEDVIDEVLPSDEELQSQIKK 1100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,002,323
Number of Sequences: 1393205
Number of extensions: 9606125
Number of successful extensions: 63316
Number of sequences better than 10.0: 481
Number of HSP's better than 10.0 without gapping: 50410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59231
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
