Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013247A_C01 KMC013247A_c01
(285 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_289872.1| similar to ORF2 [Mus musculus domesticus] 31 3.8
gb|EAA21245.1| ATPase 2 [Plasmodium yoelii yoelii] 31 5.0
ref|NP_638662.1| TonB-dependent receptor [Xanthomonas campestris... 30 8.5
gb|EAA21228.1| dynein intermediate chain 2, ciliary [Plasmodium ... 30 8.5
>ref|XP_289872.1| similar to ORF2 [Mus musculus domesticus]
Length = 1150
Score = 31.2 bits (69), Expect = 3.8
Identities = 14/36 (38%), Positives = 25/36 (68%)
Frame = +1
Query: 43 YRLQTSTNVVHQISKPC*YKEVNELILSMGAKKLWD 150
+ ++ STNV+H I+K K+ N +I+S+ A+K +D
Sbjct: 559 FNIRKSTNVIHYINK---LKDKNHMIISLDAEKAFD 591
>gb|EAA21245.1| ATPase 2 [Plasmodium yoelii yoelii]
Length = 1509
Score = 30.8 bits (68), Expect = 5.0
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Frame = +3
Query: 123 IYGGQKIMGLEKSKYHTYSISFSNN-------LNQIVSPNTALNSCCLFSLSGH 263
+Y GQKI + H Y++ F++ L++ VS NTALN+ CL+ L H
Sbjct: 1252 LYSGQKIY--YEFLLHLYNVMFTSLPIVILAILDKDVSLNTALNNPCLYKLGIH 1303
>ref|NP_638662.1| TonB-dependent receptor [Xanthomonas campestris pv. campestris str.
ATCC 33913] gi|21114560|gb|AAM42586.1| TonB-dependent
receptor [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 963
Score = 30.0 bits (66), Expect = 8.5
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 120 LIYGGQKIMGLEKSKYHTYSISFSNNLNQIVSPNTALNSCCLFSLSGHCS 269
++Y + GL+ S Y IS SN + + + N LN+C L SL+ +C+
Sbjct: 714 MVYSPHWVQGLDFS-LDWYRISISNIITSLTA-NDVLNNCYLNSLASYCA 761
>gb|EAA21228.1| dynein intermediate chain 2, ciliary [Plasmodium yoelii yoelii]
Length = 651
Score = 30.0 bits (66), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 156 KSKYHTYSISFSNNLNQIVSPNTALNSCCLFSLS 257
K+ +H YSI +SN N I+ + S C++ L+
Sbjct: 345 KTNFHIYSIEWSNTNNSIIIIGLSNGSICIYDLN 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204,387,151
Number of Sequences: 1393205
Number of extensions: 3331375
Number of successful extensions: 6308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6308
length of database: 448,689,247
effective HSP length: 70
effective length of database: 351,164,897
effective search space used: 8427957528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
