Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013246A_C01 KMC013246A_c01
(378 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_231747.1| similar to ebiP1657 [Anopheles gambiae str. PES... 31 4.4
dbj|BAA99516.1| P0489A01.7 [Oryza sativa (japonica cultivar-group)] 30 7.5
ref|NP_201134.1| oxygen-independent coproporphyrinogen-like prot... 30 9.8
ref|ZP_00074916.1| hypothetical protein [Trichodesmium erythraeu... 30 9.8
>ref|XP_231747.1| similar to ebiP1657 [Anopheles gambiae str. PEST] [Rattus
norvegicus]
Length = 230
Score = 30.8 bits (68), Expect = 4.4
Identities = 20/63 (31%), Positives = 28/63 (43%), Gaps = 6/63 (9%)
Frame = -3
Query: 337 TNNFVHELVVHIHFVIWLSLGKGFLNWNKNFGLKKKHIICL------VRTLRLSLHFSSS 176
T + +H ++H+H W SL G+ WN H + L V + LSL FSS
Sbjct: 7 TVSLLHIPLIHLHTGTWWSLRLGYCGWNCCEHFIYAHWMSLSLQFISVHWMSLSLQFSSM 66
Query: 175 SAG 167
G
Sbjct: 67 CTG 69
>dbj|BAA99516.1| P0489A01.7 [Oryza sativa (japonica cultivar-group)]
Length = 1592
Score = 30.0 bits (66), Expect = 7.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 301 HFVIWLSLGKGFLNWNKNFGLKKKHIICLVRTLRLSLHFSSSSAG 167
HF +WLS G W K+ G + ++ R +RL L ++ + G
Sbjct: 1466 HFSVWLSPGGLPAEWVKHLGRSFRSLLRRTRDMRLRLQLATLATG 1510
>ref|NP_201134.1| oxygen-independent coproporphyrinogen-like protein; protein id:
At5g63290.1 [Arabidopsis thaliana]
gi|10177310|dbj|BAB10571.1| oxygen-independent
coproporphyrinogen-like protein [Arabidopsis thaliana]
Length = 484
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = -1
Query: 102 SILFSSVIGESECCTSLIFRLFSLVVL 22
S +FSS G+ +C + L FR FS VVL
Sbjct: 7 SPIFSSFTGKPKCSSKLFFRAFSKVVL 33
>ref|ZP_00074916.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 536
Score = 29.6 bits (65), Expect = 9.8
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -1
Query: 177 ALLVRKIRLAFKTMDRTSIFWVPCTSILFSSVIGESECCTSLIFRLFSLVVL*FSFELG 1
ALL I + F ++ I+W+P S LFSS+ +LI +F LV F+LG
Sbjct: 149 ALLAGLIGIGFGALNAADIYWLPSISPLFSSI--------ALIGGIFILV-----FQLG 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,403,562
Number of Sequences: 1393205
Number of extensions: 5315192
Number of successful extensions: 10686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10683
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
