Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013241A_C01 KMC013241A_c01
(924 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F96503 protein F9C16.13 [imported] - Arabidopsis thaliana g... 32 0.40
gb|AAF79682.1|AC022314_23 F9C16.18 [Arabidopsis thaliana] 31 0.76
ref|NP_175065.1| unknown protein; protein id: At1g43995.1 [Arabi... 31 0.88
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 27 9.0
ref|NP_175165.1| hypothetical protein; protein id: At1g47320.1 [... 27 9.2
>pir||F96503 protein F9C16.13 [imported] - Arabidopsis thaliana
gi|8778657|gb|AAF79665.1|AC022314_6 F9C16.13
[Arabidopsis thaliana]
Length = 1172
Score = 32.0 bits (71), Expect(2) = 0.40
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 903 REPPGDSGVAGVLRNREGKILGCFSIPMGRK 811
R P S GVLR+REG+ LG FS+ +GR+
Sbjct: 223 RGNPALSTAGGVLRDREGEWLGGFSLNIGRR 253
Score = 23.9 bits (50), Expect(2) = 0.40
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 923 NVDGASRGNP 894
N DGASRGNP
Sbjct: 217 NTDGASRGNP 226
>gb|AAF79682.1|AC022314_23 F9C16.18 [Arabidopsis thaliana]
Length = 196
Score = 31.2 bits (69), Expect(2) = 0.76
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 903 REPPGDSGVAGVLRNREGKILGCFSIPMGRK 811
R P S GVLR+REG+ LG FS+ +GR+
Sbjct: 75 RGNPTLSTAGGVLRDREGEWLGGFSLNIGRR 105
Score = 23.9 bits (50), Expect(2) = 0.76
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 923 NVDGASRGNP 894
N DGASRGNP
Sbjct: 69 NTDGASRGNP 78
>ref|NP_175065.1| unknown protein; protein id: At1g43995.1 [Arabidopsis thaliana]
Length = 126
Score = 31.2 bits (69), Expect(2) = 0.88
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 903 REPPGDSGVAGVLRNREGKILGCFSIPMGRK 811
R P S GVLR+REG+ LG FS+ +GR+
Sbjct: 75 RGNPTLSTAGGVLRDREGEWLGGFSLNIGRR 105
Score = 23.9 bits (50), Expect(2) = 0.88
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 923 NVDGASRGNP 894
N DGASRGNP
Sbjct: 69 NTDGASRGNP 78
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 27.3 bits (59), Expect(2) = 9.0
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = -1
Query: 903 REPPGDSGVAGVLRNREGKILGCFSIPMGR 814
R PG + GVLR+ EG G FS+ +GR
Sbjct: 157 RGNPGLASAGGVLRDCEGAWCGGFSLNIGR 186
Score = 23.9 bits (50), Expect(2) = 9.0
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 923 NVDGASRGNP 894
N DGASRGNP
Sbjct: 151 NTDGASRGNP 160
>ref|NP_175165.1| hypothetical protein; protein id: At1g47320.1 [Arabidopsis
thaliana]
Length = 259
Score = 27.3 bits (59), Expect(2) = 9.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 903 REPPGDSGVAGVLRNREGKILGCFSIPMGR 814
R PG + GVL++ EG+ G FS+ +GR
Sbjct: 110 RGNPGLATAGGVLQDNEGRWCGGFSLNIGR 139
Score = 23.9 bits (50), Expect(2) = 9.2
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 923 NVDGASRGNP 894
N DGASRGNP
Sbjct: 104 NTDGASRGNP 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 772,281,454
Number of Sequences: 1393205
Number of extensions: 16809784
Number of successful extensions: 35340
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 33826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35328
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51027805888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
